New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3833927 =	86 (1.150)	9 (0.130)	8/240	NT	10.8%	coding (549/2178 nt)	vgrG‑II	type VI secretion system protein
	?	NC_002947	3833958 =	68 (0.960)					coding (580/2178 nt)	vgrG‑II	type VI secretion system protein

AACGCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3834081‑3833927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccggGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCTTGCGTTACAGCGAACAGGTTCGAACAGCGC  >  NC_002947/3833958‑3834105                                                                                                                                                                                                                                                                                                                   tgctCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CA                                                                                                                                                           >  2:767138/5‑150    GCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGTTGTCCCCGCGGCGGAGCGGGCCCAGCGCCCG‑‑CAGCC                                                                                                                                                        >  2:1259549/1‑150                    AGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCATCAAGAC                                                                                                                                        <  1:1754905/150‑1                                           CAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGC                                                                                                                                                         <  1:1251979/110‑1                                           CAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGC                                                                                                                                                         >  2:1251979/1‑110                                                           CACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCAT                                                                                                                                              <  1:262022/105‑1                                                           CACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTG‑‑CTGGCGCTGGGCCAGATCAGCCGGGGGGCCAT                                                                                                                                              >  2:262022/1‑105                                                                                                                            CCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCT                                >  1:1409536/1‑150                                                                                                                             CCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCTT                               >  1:103367/1‑150                                                                                                                             CCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGAGATTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGAGGAGATCAAGCCAGGCCTTACCTGCGGTGCTT                               >  2:164244/1‑150                                                                                                                                GCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGTGGGCCATCAAGACCGATGATGAGGATGAAGGGTT                                                                                                                   <  1:1363132/63‑1                                                                                                                                GCTGATCTGGCCCAGCGCCAG‑‑CAGCCGGTGGGCCATCAAGACCGATGATGAGGATGAAGGGTT                                                                                                                   >  2:1363132/1‑63                                                                                                                                          CCCAGCGCCAG‑‑CAGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCTTGCGTTACAGCGAA                  <  2:103367/150‑1                                                                                                                                                        AGCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGTTCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCTAGGCCTTGCCTGCGGCGCTTGCGTTACAGCGAACAGGTTCGAACA      <  1:899653/150‑1                                                                                                                                                         GCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCTTGCGTTACAGCGAACAGGTTCGAACAG     >  2:917808/1‑150                                                                                                                                                         GCCGGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCTTGCGTCCCGGGGAACAGGTTCGAACAG     >  2:901862/1‑150                                                                                                                                                            GGGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCTTGCGTTACAGCGAACAGGTTCGAACAGCGC  >  1:658090/1‑150                                                                                                                                                                                                                                                                                                                   AACGCAAGCGCCGCAGGCAAGGCCTGGCCTGATCGCCGCCTCCAACGGATCGGTACAGCACCTGATCGGGGCCCACGTCGTCATTGTGAAACCCTTCATCCTCATCATCGGTCTTGATGGCCCCCCGGCTGATCTGGCCCAGCGCCAG‑‑CAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3834081‑3833927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccggGGGGCCATCAAGACCGATGATGAGGATGAAGGGTTTCACAATGACGACGTGGGCCCCGATCAGGTGCTGTACCGATCCGTTGGAGGCGGCGATCAGGCCAGGCCTTGCCTGCGGCGCTTGCGTTACAGCGAACAGGTTCGAACAGCGC  >  NC_002947/3833958‑3834105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.