New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4581829	71 (0.950)	4 (0.060)	4/240	NT	6.2%	coding (1643/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase
	?	NC_002947	= 4581871	53 (0.750)					coding (1601/3321 nt)	treSB	bifunctional trehalose synthase B/maltokinase

GCAGCGTATCGCTTGCGGGGGCTTGCAGCAGTTCTTCCATGCGCTTGCGCAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4581674‑4581829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcaGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTATGCGTTCTACTGGTTCCTGCTGGCCAGCCGCGATCGCATGCCCAGCTGGCACATCCAGCCCACCGAGGGGTTACCCGAATTGACCACATTGGTACTG  <  NC_002947/4581871‑4581723                                                                                                                                                                                                                                                                                                                   GCAGCGTATCGCTTGCGGGGGCTCGCAGCAGTTCTTCCATGCGCTTGCGCAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATTGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAG                                                                                                                                                             <  1:1668618/150‑1      GTATCGCTTGCGGGGGCTTGCAGCAGTTCTTCCATGCGCTTGCGCAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGC                                                                                                                                                        >  1:251876/1‑150                                                                              CCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTATGC                                                                                                <  1:1197004/134‑1                                                                              CCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTATGC                                                                                                >  2:1197004/1‑134                                                                                                       TGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTAT                                                                                                  >  1:1769267/1‑107                                                                                                       TGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTAT                                                                                                  <  2:1769267/107‑1                                                                                                                                                          GCAGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTATGCGTTCTACTGGTTCCTGCTGGCCAGCCGCGATCGCATGCCCAGCTGGCACATCCAGCCCACCGAGGGGTTACCCGAATTGAC               <  1:102242/139‑1                                                                                                                                                          GCAGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTATGCGTTCTACTGGTTCCTGCTGGCCAGCCGCGATCGCATGCCCAGCTGGCACATCCAGCCCACCGAGGGGTTACCCGAATTGAC               >  2:102242/1‑139                                                                                                                                                            AGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTATGCGTTCTACTGGTTCCTGCTGGCCAGCCGCGATCGCATGCCCAGCTGGCACATCCAGCCCACCGAGGGGTTACCCGAATTGACCACATTGGTACTG  >  1:1035546/1‑150                                                                                                                                                                                                                                                                                                                   GCAGCGTATCGCTTGCGGGGGCTTGCAGCAGTTCTTCCATGCGCTTGCGCAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4581674‑4581829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcaGCGCGTTCCCGCCAATAGGCCAACTGCCGTTTCTGCTGACCTTGCCACCTTATGCGTTCTACTGGTTCCTGCTGGCCAGCCGCGATCGCATGCCCAGCTGGCACATCCAGCCCACCGAGGGGTTACCCGAATTGACCACATTGGTACTG  <  NC_002947/4581871‑4581723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.