New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4581829 | 71 (0.950) | 4 (0.060) | 4/240 | NT | 6.2% | coding (1643/3321 nt) | treSB | bifunctional trehalose synthase B/maltokinase |
? | NC_002947 | = 4581871 | 53 (0.750) | coding (1601/3321 nt) | treSB | bifunctional trehalose synthase B/maltokinase |
CAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCCGTCGGCGTCGGTATACTCGCGGATATAGGCAAGGATG > NC_002947/4581723‑4582020 | cAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCt > 1:1035546‑M2/1‑149 (MQ=255) gTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCtgc > 2:102242‑M2/1‑136 (MQ=255) gTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCtgc < 1:102242‑M2/139‑4 (MQ=255) gTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCAtc > 2:1718854/1‑150 (MQ=255) tCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCAtct > 1:1650030/1‑150 (MQ=255) tCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGAGCCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCAtct > 1:1288692/1‑150 (MQ=255) aCCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCGAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACtt > 2:1756589/1‑150 (MQ=255) ccccTCGGTGGGCTGGATGTGCCAGCTGGGCAGGTGATCGCGGCTGGCCAGCATGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTTGCGGGAACTCGCTGCCACTCAGCATCTTTACCGGTACttt < 2:1342308/150‑1 (MQ=255) cccTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTg > 1:813862/1‑150 (MQ=255) cccTCGGTGGGCTGGATGTGCAAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCAtctc > 2:1800509/1‑137 (MQ=255) cccTCGGTGGGCTGGATGTGCAAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCAtctc < 1:1800509/137‑1 (MQ=255) cTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACttt < 2:691861/147‑1 (MQ=255) cTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACttt > 1:691861/1‑147 (MQ=255) cTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑Tc < 2:251876/150‑1 (MQ=255) gCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCg < 1:1775527/132‑1 (MQ=255) gCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCg > 2:1775527/1‑132 (MQ=255) gATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGa > 2:300828/1‑150 (MQ=255) gCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAAtt > 1:1461045/1‑150 (MQ=255) ccAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAACCGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTc > 2:674285/1‑150 (MQ=255) ccAGCTGGGCATGCGACCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGGGGCGAGGTCAGCAGCAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACCATTc > 2:567650/1‑150 (MQ=255) aGCTGGGCATGCGATGGCGGCTGGCCAGCAGGAAGCAGTAGAACGCATAAGGTGGAAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGa > 2:420200/1‑150 (MQ=255) aGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGa < 1:870836/150‑1 (MQ=255) aGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGa < 2:1479714/150‑1 (MQ=255) cTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGt < 2:1407035/150‑1 (MQ=255) tGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGtt < 2:1650030/150‑1 (MQ=255) gggCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTc < 1:1718854/150‑1 (MQ=255) gATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCt > 2:418145/1‑150 (MQ=255) gcgGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGACAGCCTGggc > 1:147536/1‑150 (MQ=255) tGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGa < 2:1511752/121‑1 (MQ=255) tGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGa > 1:1511752/1‑121 (MQ=255) gCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGCAACGGCAGTTGGCCTATTGGCGGGAACGCCCGGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACgg < 1:128672/150‑1 (MQ=255) gCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACgg < 1:966317/150‑1 (MQ=255) gCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACgg < 2:1257048/150‑1 (MQ=255) cagGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGacac > 2:614789/1‑150 (MQ=255) agGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACg > 2:1225349/1‑150 (MQ=255) ggAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGt > 1:1327419/1‑150 (MQ=255) cccAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTgg < 1:1326463/149‑1 (MQ=255) aCCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTgg > 1:490399/1‑150 (MQ=255) tAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCGGCCTGGGCGGCACgg > 1:348667/1‑135 (MQ=255) tAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCGGCCTGGGCGGCACgg < 2:348667/135‑1 (MQ=255) aaCGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGAACGGGACACATTGGTCACTCag > 1:969107/1‑150 (MQ=255) gCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCtgccaccttatgcgttctactggttcctgctggccagccgcgatcgcatgcccagctggcacatccagcccaccgaggg > 2:1197004‑M2/1‑55 (MQ=255) gCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCtgccaccttatgcgttctactggttcctgctggccagccgcgatcgcatgcccagctggcacatccagcccaccgaggg < 1:1197004‑M2/134‑80 (MQ=255) cATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCACCGCCGAGGa < 2:1268975/150‑1 (MQ=255) aTAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCtgccaccttatgcgttctactggttcctgctggccagccgcgatcgcatgccca < 2:1769267‑M2/107‑55 (MQ=255) aTAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCtgccaccttatgcgttctactggttcctgctggccagccgcgatcgcatgccca > 1:1769267‑M2/1‑53 (MQ=255) aTAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGAt > 1:1613297/1‑150 (MQ=255) aGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGAc > 2:729366/1‑150 (MQ=255) gCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCGTCTCCACCGGTACTTTGAACAGAAGA‑AGTGACAAGTCGAGTTCGGCAGCCTGCCCGGCCCCGGTCACGAGTGCCACGCAGAGAATGACCTCgg > 1:1773152/1‑150 (MQ=255) aaGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGATGACACCCAGCATCTCCTCTGGTACGATG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTa < 1:1467790/150‑1 (MQ=255) gTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTg < 1:420200/150‑1 (MQ=255) cagAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCcgtc > 2:1065306/1‑150 (MQ=255) cagAAACGGCAGTTGGCCTATTGGCGGGAACGCGCGGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCcgtc < 1:300828/150‑1 (MQ=255) aaCGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCcgtcggcg < 1:1225349/150‑1 (MQ=255) aaCGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTA‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCcgtcggcg < 1:1756589/150‑1 (MQ=255) aCGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCcgtcggcgt < 2:657546/150‑1 (MQ=255) gCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCcgtcggcgtcgg < 2:344007/150‑1 (MQ=255) ccTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCCGTCGGCGTCGGTATACTcg > 1:1216852/1‑150 (MQ=255) ttGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGACAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCCGTCGGCGTCGGTATACTCGCGGa < 2:147536/150‑1 (MQ=255) aCGCGGTGCCACACAGGATATCCACCGGTACTTTG‑TCGGCATATAGTGAAAATTCGAGTTCGGCAGCCTGGGCAGAAAGGCAAACGTTGGGCACGTAGAGGATGACATCGGTATTGACGCCGGCGTCGGTATACTCGCGGATATACGCaa < 2:776968/150‑1 (MQ=255) cTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCCGTCGGCGTCGGTATACTCGCGGATATAGGCAAGGATg < 1:1044518/150‑1 (MQ=255) | CAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTG‑TCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGGGCGGCACGGGACACGTTGGCCACGCAGAGGATGACCTCGGTATTGCCGTCGGCGTCGGTATACTCGCGGATATAGGCAAGGATG > NC_002947/4581723‑4582020 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |