| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5112607 = | 43 (0.580) | 8 (0.130) | 8/210 | NT | 18.3% | intergenic (‑148/+118) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein |
| ? | NC_002947 | 5112712 = | 36 (0.580) | intergenic (‑253/+13) | rluB/PP_4497 | 23S rRNA pseudouridylate synthase B/hypothetical protein | |||||
AGCCTGAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5112768‑5112607‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaagaggccagcacaGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGTCTCCTCTTT > NC_002947/5112712‑5112859 AGCCTGAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCGGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCACGCCCGCtcc < 2:1687520/150‑4 GAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGC > 2:613425/1‑150 GAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCGCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGC < 1:1112090/150‑1 AGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCC < 1:1922914/150‑1 GCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCA < 1:1234217/150‑1 TCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGGCCGCGAAGAGGCCAGCA > 1:1883467/1‑150 GGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAG < 2:801264/122‑1 GGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAG > 1:801264/1‑122 GCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCC > 2:61688/1‑93 GCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCC < 1:61688/93‑1 CTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGC > 2:94369/1‑77 CTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGC < 1:94369/77‑1 GGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGG > 1:216299/1‑106 GGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGG < 2:216299/106‑1 GGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTC > 1:68756/1‑150 GCAAACCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCC > 2:1908960/1‑150 AAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAG < 1:1526333/101‑1 AAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAG > 2:1526333/1‑101 GCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTC > 1:1898444/1‑116 GCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTC < 2:1898444/116‑1 GCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCA > 2:897555/1‑77 GCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCA < 1:897555/77‑1 aaGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCA < 1:1298865/95‑1 aaGCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCA > 2:1298865/3‑97 cCCCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCCCGAGCGGCTCCCCCACCGGAGGCTCAGGCTCCCCCCCCCGCAGAGCATCAAAATCGGTTGTCAAACCGTCTCCCATGGCATCCAGCTCCACCAACAGGCTAC < 1:1552546/149‑1 CCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGG > 2:1556214/1‑150 CCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGG < 1:1908960/150‑1 CCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACC < 2:101533/113‑1 CCGCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACC > 1:101533/1‑113 GCGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAA > 2:485267/1‑150 CGAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATCGCATCCAGCTCCACCAACAGGCTACGGAAG < 2:1116894/150‑1 GAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTT > 2:1493174/1‑101 GAAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTT < 1:1493174/101‑1 AAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATGTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCG < 1:1913510/109‑1 AAGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATGTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCG > 2:1913510/1‑109 AGAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTG < 2:278421/150‑1 GAGGCCAGCACAGGCAGCAGATCAATCAGGGCTGAGCGTTGAGCGCCTCCTCCACCGAAGGCTCAGGCTCCTCTCCCCGCAGAGCATCAAAATCGGTTATCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGACGCGGG > 2:564456/1‑150 CCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGT < 2:447162/147‑1 CCAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGT > 1:447162/1‑147 CAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGTCTCC < 1:937008/150‑1 CAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGG > 2:53354/1‑138 CAGCACAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGG < 1:53354/138‑1 CAGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGTCTCCTCTTT < 1:1796093/150‑1 AGCCTGAGCCTCCGGTGGAGGAGGAGATCAAGGCTCAGCCCTGATTGATCTGCTGCCTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGGTATCACAGGCCCCGAAGGTTGCGCGAACATGTAGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5112768‑5112607‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaagaggccagcacaGGCAGCAGATCAATCAGGGCTGAGCCTTGATCTCCTCCTCCACCGGAGGCTCAGGCTCCTCTCCCCGCAGATCATCAAAATCGGTTTTCAAACCGTCTTCCATGGCATCCAGCTCCACCAACAGGCTACGGAAGCTGGTCTCCTCTTT > NC_002947/5112712‑5112859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |