| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5616257 = | 68 (0.910) | 4 (0.060) | 4/244 | NT | 6.3% | coding (1255/1809 nt) | msbA | lipid A export ATP‑binding/permease MsbA |
| ? | NC_002947 | 5616292 = | 53 (0.740) | coding (1220/1809 nt) | msbA | lipid A export ATP‑binding/permease MsbA | |||||
GAGCGTGAAGTGCTGAGCGATATCAGTTTTGTCGCCGAGCCCGGGCAGATGATCGCCCTGGTCGGCCGCTCCGGCAGTGGCAAGTCCACCCTGGCGGCGCTGATCCCGCGCTTCTATCACCACGACAAGGGGCAGATCCTGCTCGATGGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5616410‑5616257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGCCACTGCCGGAGCGGCCGACCAGGGCGATCATCTGCCCGGGCTCGGCGACAAAACTGATATCGCTCAGCACTTCACGCTCGGTACCCGGGTAGGTAAAGCTCAGGTTAC > NC_002947/5616292‑5616439 gcGCGTGAAGTGCTGAGCGATATCAGTTTTGTCGCCGAGCCCGGGCAGATGATCGCCCTGGTCGGCCGCTCCGGCAGTGGCAAGTCCACCCTGGCGGCGCTGATCCCGCGCTCCTATCACCACGACAAGGGGCAGATCCTGCTCGATGGC > 2:1917794/3‑150GAGCGTGAAGTGCTGAGCGATATCAGTTTTGTCGCCGAGCCCGGGCAGATGATCGCCCTGGTCGGCCGCTCCGGCAGTGGCAAGTCCACCCTGGCGGCGCTGATCCCGCGCTTCTATCACCACGACAAGGGGCAGATCCTGCTCGATGGC > 2:652845/1‑150 GCGTGAAGTGCTGAGCGATATCAGTTTTGTCGCCGAGCCCGGGCAGATGATCGCCCTGGTCGGCCGCTCCGGCAGTGGCAAGTCCACCCTGGCGGCGCTGATCCCGCGCTTCTATCACCACGACAAGGGGCAGATCCTGCTCGATGGCGT < 1:278306/150‑1 CGTGAAGTGCTGAGCGATATCAGTTTTGTCGCCGAGCCCGGGCAGATGGTCTCCCTGGTCGGCCGCTCCGGCAGTGGCAAGTCCACCCTGGCGGCGCTGATCCCGCGCTTCTATCACCCCGACAAGGGGCAGATCCTGCTCGATGGCGTG < 1:1056289/150‑1 ACCACGACAAGGGGCAGATCCTGCTCGATGGCGTGGTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGGCACTGCCGGAGCGGCCGACCAGGGCGACAATATGCGCGGCCTCGTTGTCAAAACTGATATCGCTCAGCACTTCA > 1:887475/1‑150 ACGACAAGGGGCAGATCCTGCTCGATGGCGTGGTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGCCACTGCCGGAGCGGCCGACCAGGGCGATC > 1:1433975/1‑102 ACGACAAGGGGCAGATCCTGCTCGATGGCGTGGTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGCCACTGCCGGAGCGGCCGACCAGGGCGATC < 2:1433975/102‑1 CAAGGGGCAGATCCTGCTCGATGGCGTGGTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGCCACTGCCGGAGCGGCCGACCAGGGCGATCATCTGCCCGGGCTCGGCGACAAAACTGATATCGCTCAGCACTTCACGCTCGG > 2:200689/1‑150 GGCGTGGTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGCCACTGCCGGAGCGGCCGACCAGGGCGATCATCTGCCCGGGCTCGGCGACAAAACTGATATCGCTCAGCACTTCACGCTCGGTACCCGGGTAGGTAAAGCTCAG < 1:200689/150‑1 GGTGATAGAAGCGCGGGATCAGCGTCGCCCGGGTCGCCTCGCCACTGCCGGAGCGGCCGACCAGGGCGATATTATGCCCGGGCTCGGCGACAAAACTGATATCGCTCAGCACTTCACGCTCGGTACCCGGGTAGGTAAAGCTCAGGTTAC < 1:423401/150‑1 GGTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGCCACTGCCGGAGCGGCCGACCAGGGCGATCATCTGCCCGGGCTCGGCGACAAAACTGATATCGCTCAGCACTTCACGCTCGGTACCCGGGTAGGTAAAGCTCAGGTTAC < 1:1225522/150‑1 GGTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGCCACTGCCGGAGCGGCCGACCAGGGCGATCATCTGCCCGGGCTCGGCGACAAAACTGATATCGCTCAGCACTTCACGCTCGGTACCCGGGTAGGTAAAGCTCAGGTTAC < 1:1319639/150‑1 GAGCGTGAAGTGCTGAGCGATATCAGTTTTGTCGCCGAGCCCGGGCAGATGATCGCCCTGGTCGGCCGCTCCGGCAGTGGCAAGTCCACCCTGGCGGCGCTGATCCCGCGCTTCTATCACCACGACAAGGGGCAGATCCTGCTCGATGGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5616410‑5616257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggTGATAGAAGCGCGGGATCAGCGCCGCCAGGGTGGACTTGCCACTGCCGGAGCGGCCGACCAGGGCGATCATCTGCCCGGGCTCGGCGACAAAACTGATATCGCTCAGCACTTCACGCTCGGTACCCGGGTAGGTAAAGCTCAGGTTAC > NC_002947/5616292‑5616439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |