New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5672886	58 (0.780)	6 (0.080)	6/250	NT	8.6%	coding (78/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase
	?	NC_002947	= 5672919	70 (0.950)					coding (111/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase

TCCCAACGGGCCCAGCCCACACGAGAACAGGATCGCCCATGTCCTTTGCTTCCCTCGGTCTCTCCGAGGCTCTTGTCCGCGCTATCGAGGCTGCGGGCTACACCCAGCCGACCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5672771‑5672886 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTTGCAACACGGCGGGAATAGCCCGCTGTTGCACGGGGGTCGGCTGGGTGTAGCCCGCAGCCTCGATAGCGCGGACAAGAGCCTCGGAGAGACCGAGGGAAGCAAAGGACATGGGCGATCCTGTTCTCGTGTGGGCTGGGCCCGTTGGGA  <  NC_002947/5672919‑5672771                                                                                                                                                                                                                                                                           TCCCAACGGGCCCAGCCCACATTAGAACAGGATCGCCCATGTCCTTTGCTTCCCTCGGTCTCTCCGAGGCTCTTGTCCGCGCTATCGAGGCTGCGGGCTACACCCAGCCGACCCCCGTGCAACACGGCGGGAATAGCCCGCTGTTGCACG                                                                                                                     <  1:1531799/150‑1           CCCAGCCCACACGAGAACAGGATCGCCCATGTCCTTTGCTTCCCTCGGTCTCTCCGAGGCTCTTGTCCGCGCTATCGAGGCTGCGGGCTACACCCAGCCGACCCCCTTGCAACACGGCGGGAATAGCCCGATGTTGAACGGGGGTCGGCT                                                                                                           <  2:1268562/150‑1             CAGCCCACACGAGAACAGGATCGCCCATGTCCTTTGCTTCCCTCGGTCTCTCCGAGGCTCTTGTCCGCGCTATCGAGACTGCGGGCTACACCCAGCCGACCCCCGTGCAACACGGCGGGAATAGCCCGCTGTTGCA                                                                                                                       >  1:1337077/1‑136             CAGCCCACACGAGAACAGGATCGCCCATGTCCTTTGCTTCCCTCGGTCTCTCCGAGGCTCTTGTCCGCGCTATCGAGACTGCGGGCTACACCCAGCCGACCCCCGTGCAACACGGCGGGAATAGCCCGCTGTTGCA                                                                                                                       <  2:1337077/136‑1                   ACACGAGAACAGGATCGCCCATGTCCTTTGCTTCCCTCGGTCTCTCCGAGGCTCTTGTCCGCGCTATCGAGGCTGCGGGCTACACCCAGCCGACCCCCTTGCAACACGGCGGGAATAGCCCGCTGTTGCACGGG                                                                                                                   <  1:611015/134‑1                   ACACGAGAACAGGATCGCCCATGTCCTTTGCTTCCCTCGGTCTCTCCGAGGCTCTTGTCCGCGCTATCGAGGCTGCGGGCTACACCCAGCCGACCCCCTTGCAACACGGCGGGAATAGCCCGCTGTTGCACGGG                                                                                                                   >  2:611015/1‑134                                                                                                                   CCTTGCAACACGGCGGGAATAGCCCGCTGTTGCACGGGGGTCGGCTGGGTGTAGCCCGCAGCCTCGATAGCGCGGACAAGAGCCTCGGAGAGACCGAGGGAAGCAAAGGACAT                                        <  1:760052/113‑1                                                                                                                   CCTTGCAACACGGCGGGAATAGCCCGCTGTTGCACGGGGGTCGGCTGGGTGTAGCCCGCAGCCTCGATAGCGCGGACAAGAGCCTCGGAGAGACCGAGGGAAGCAAAGGACAT                                        >  2:760052/1‑113                                                                                                                    CTTGCAACACGGCGGGAATAGCCCGCTGTTGCACGGGGGTCGGCTGGGTGTAGCCCGCAGCCTCGATAGCGCGGACAAGAGCCTCGGAGAGACCGAGGGAAGCAAAGGACATGGGCGATCCTGTTCTCGTGTGGGCTGGGCCCGTTGGGA  >  2:1595446/1‑150                                                                                                                                                                                                                                                                           TCCCAACGGGCCCAGCCCACACGAGAACAGGATCGCCCATGTCCTTTGCTTCCCTCGGTCTCTCCGAGGCTCTTGTCCGCGCTATCGAGGCTGCGGGCTACACCCAGCCGACCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5672771‑5672886 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTTGCAACACGGCGGGAATAGCCCGCTGTTGCACGGGGGTCGGCTGGGTGTAGCCCGCAGCCTCGATAGCGCGGACAAGAGCCTCGGAGAGACCGAGGGAAGCAAAGGACATGGGCGATCCTGTTCTCGTGTGGGCTGGGCCCGTTGGGA  <  NC_002947/5672919‑5672771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.