| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5682433 = | 68 (0.910) | 7 (0.100) | 7/238 | NT | 9.9% | coding (4516/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| ? | NC_002947 | 5682468 = | 64 (0.920) | coding (4481/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver | |||||
CCTGTCGCCCAGCCGCGAGATCGTGGTGAAAAGCCTGGGGCCGCAGTTTGCCGCGGTTGCCGGGTTATCGGGGGCGACACTGCTGGGCGATGGCCGGGTGGTGCTGATTCTTGACCTGCTGGGCCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5682587‑5682433‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcccAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCTC > NC_002947/5682468‑5682616 CCTGTCGCCCAGCCGCGAGATCGTGGTGAAAAGCCTGGGGCCGCAGTTTGCCGCGGTTGCCGGGTTATCGGGGGCGACACTGCTGGGCGATGGCCGGGTGGTGCTGATTCTTGACCTGCTGGGCCAGTTG‑CGCGGCCAGCAGCGACGGCT > 2:506356/1‑150 AGATCGTGGTGAAAAGCCTGGGGCCGCAGTTTGCCGCGGTTGCCGGGTTATCGGGGGCGACACTGCTGGGCGATGGCCGGGTGGTGCTGATTCTTGACCTGCTGGGCCAGCCGTCGCTGCTGGCCGCG‑CAGCTGGCCCAGCAGGTCAAGA < 1:1635259/150‑1 GGTGAAAAGCCTGGGGCCGCAGTTTGCCGCGGTTGCCGGGTTATCGGGGGCGACACTGCTGGGCGATGGCCGGGTGGTGCTGATTCTTGACCTGCTGGGCCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCC > 1:1147680/1‑131 GGTGAAAAGCCTGGGGCCGCAGTTTGCCGCGGTTGCCGGGTTATCGGGGGCGACACTGCTGGGCGATGGCCGGGTGGTGCTGATTCTTGACCTGCTGGGCCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCC < 2:1147680/131‑1 CTGGGCCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCCGGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGG > 1:1036594/1‑150 GCCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTT > 1:1354276/1‑125 GCCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTT < 2:1354276/125‑1 CCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTG > 1:1144003/1‑143 CCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTG < 2:1144003/143‑1 GCAGCGACGGCTGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGA < 2:1635259/150‑1 TGGCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGAC < 1:1551939/150‑1 GCCCAGCAGGTCAAGAATCAGCCCCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACC < 2:979540/70‑1 GCCCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACC > 1:979540/1‑70 CCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCCAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCT > 2:197336/1‑150 CCAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCT > 2:295432/1‑150 CAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCTC > 1:1494126/1‑150 CAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGCCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGCCTGCTC > 1:32850/1‑150 CCTGTCGCCCAGCCGCGAGATCGTGGTGAAAAGCCTGGGGCCGCAGTTTGCCGCGGTTGCCGGGTTATCGGGGGCGACACTGCTGGGCGATGGCCGGGTGGTGCTGATTCTTGACCTGCTGGGCCAGCTG‑CGCGGCCAGCAGCGACGGCTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5682587‑5682433‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcccAGCAGGTCAAGAATCAGCACCACCCGGCCATCGCCCAGCAGTGTCGCCCCCGATAACCCGGCAACCGCGGCAAACTGCGGCCCCAGGCTTTTCACCACGATCTCGCGGCTGGGCGACAGGCTGTCGGCCTGGATGGCGAACGACTGCTC > NC_002947/5682468‑5682616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |