New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5985540 =	54 (0.720)	5 (0.070)	4/236	NT	9.3%	coding (112/405 nt)	PP_5244	AraC family transcriptional regulator
	?	NC_002947	5985574 =	47 (0.680)					coding (78/405 nt)	PP_5244	AraC family transcriptional regulator

CGCACAATTAACAACAATTCAGGTTTGGCTCAGGACTTCGTCATGTGCCGGGGGCGAGACTTTCTGCATTGAACAGGAGAGTCGCCATGTACCCTGGGACGCCCGAAGCGCCGCTGCAAACCCCCGGCGCACTCACGCCCGCGCGGCTGCGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5985695‑5985540 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgccgggGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGCGACTCTCCTGTTCAATGCAGAAAGTCTCGCCCCCGGCACATGACGAAGTCCTGAGCCAAACCTGAATTGTTGTTAATT  >  NC_002947/5985574‑5985690                                                                                                                                                                                                                                                                                   CGCACAATTAACAACAATTCAGGTTTGGCTCAGGACTTCGTCATGTGCCGGGGGCGAGACTTTCTGCATTGAACAGGAGAGTCGCCATGTACCCTGGGACGCCCGAAGCGCCGCTGCAAACCCCCGGCGCACTCACGCCCGCGCGGCTGC                                                                                                                             <  2:893186/150‑1    ACAATTAACAACAATTCAGGTTTGGCTCAGGACTTCGTCATGTGCCGGGGGCGAGAGTTTCTGCATTAAAGCACAAATGCGCCAGGTACCCTGGGACGCTCGAAGCGCCGCTGCAAACCCCCGGCGCACTCACGCCCGCGCGGCTGCGCC                                                                                                                          >  2:1005033/1‑150    ACAATTAACAACAATTCAGGTTTGGCTCAGGACTTCGTCATGTGCCGGGGGCGAGACTTTCTGCATTGAACAGGAGAGTCGCCATGTACCCTGGGACGCCCGAAGCGCCGCTGCAAACCCCCGGCGCACTCACGCCCGCGCGGCTGCGCC                                                                                                                          >  2:577329/1‑150                                                                                                                   TGCAAGCCCCCGGCGCACTCACGCCCGCGCGGCTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGCGACTCTCCTGTTCAATGCAGAAAGTCTCGCCCCCGGCACATGACGAAGTCCTGAGCCAAACCTGAATTG           >  2:1508541/1‑150                                                                                                                        ACCCCCGGCGCACTCACGCCCGCGCGGCTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGCGACTCTCCTGTTCAATGCAGAAAGTCTCGCCCCCGGCACATGACGAAGTCCTGAGCCAAACCTGAATTGTTGTT      <  1:1508541/150‑1                                                                                                                            CCGGCGCACTCACGCCCGCGCGGCTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGCGACTCTCCTGTTCAATGCAGAAAGTCTCGCCCCCGGCACATGACGAAGTCCTGAGCCAAACCTGAATTGTTGTTAATT  >  2:1446935/1‑150                                                                                                                            CCGGCGCACTCACGCCCGCGCGGCTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGCGACTCTCCTG                                                                      <  1:1769518/82‑1                                                                                                                            CCGGCGCACTCACGCCCGCGCGGCTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGCGACTCTCCTG                                                                      >  2:1769518/1‑82                                                                                                                                                                                                                                                                                   CGCACAATTAACAACAATTCAGGTTTGGCTCAGGACTTCGTCATGTGCCGGGGGCGAGACTTTCTGCATTGAACAGGAGAGTCGCCATGTACCCTGGGACGCCCGAAGCGCCGCTGCAAACCCCCGGCGCACTCACGCCCGCGCGGCTGCGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5985695‑5985540 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgccgggGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACATGGCGACTCTCCTGTTCAATGCAGAAAGTCTCGCCCCCGGCACATGACGAAGTCCTGAGCCAAACCTGAATTGTTGTTAATT  >  NC_002947/5985574‑5985690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.