New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4889614 =50 (0.670)7 (0.120) 4/200 NT 16.0% intergenic (+15/‑138) hyi/glxR hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
?NC_002947 4889705 = 34 (0.580)intergenic (+106/‑47) hyi/glxR hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase

CCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCT  >  NC_002947/4889479‑4889757
                                                                                                                                       |                                                                                                                                                
aaatgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCggg                                                                                                                                    >  1:1226135‑M1/136‑150 (MQ=255)
 cGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACGACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGc                                                                                                                                   <  2:1440009/150‑1 (MQ=255)
   tgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTc                                                                                                                                 >  2:952345‑M1/133‑150 (MQ=255)
   tgaacaggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTc                                                                                                                                 >  2:70620‑M1/133‑150 (MQ=255)
   cTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTc                                                                                                                                 >  2:47817/1‑150 (MQ=255)
       cTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGccc                                                                                                                             >  1:1247206/1‑150 (MQ=255)
        aggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCcg                                                                                                                            <  2:1085327‑M1/23‑1 (MQ=255)
        aggctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCcg                                                                                                                            >  1:1247529‑M1/128‑150 (MQ=255)
         ggctgtgacctgccttttgcaggttctgagccattggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCt                                                                                                                                               <  1:666898‑M1/4‑1 (MQ=255)
         ggctgtgacctgccttttgcaggttctgagccattggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCt                                                                                                                                               >  2:666898‑M1/127‑130 (MQ=255)
          ttCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCcgcg                                                                                                                         >  2:841803/1‑150 (MQ=255)
          ttCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCcgcg                                                                                                                         >  2:1597474/1‑150 (MQ=255)
           ctgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGa                                                                                                                        <  1:1325353‑M1/26‑1 (MQ=255)
            tgtgacctgccttttgcaggttctgagccatgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGaa                                                                                                                       <  1:317215‑M1/27‑1 (MQ=255)
             gAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAac                                                                                                                      >  2:1623757/1‑150 (MQ=255)
              aaCACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAaca                                                                                                                     >  1:543334/1‑150 (MQ=255)
              aaCACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCGAGCCcgctcc                                                                                                                       >  2:1787121/1‑145 (MQ=255)
              aaCACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCGAGCCcgctcc                                                                                                                       <  1:1787121/148‑4 (MQ=255)
                  ccTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCgg                                                                                                                 <  1:1597474/150‑1 (MQ=255)
                  ccTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCgg                                                                                                                 <  2:83147/150‑1 (MQ=255)
                   cTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCAACGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTgg                                                                                                                                           >  2:737126/1‑124 (MQ=255)
                   cTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCAACGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTgg                                                                                                                                           <  1:737126/124‑1 (MQ=255)
                     ggACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTc                                                                                                                                 >  1:225462/1‑132 (MQ=255)
                     ggACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTc                                                                                                                                 <  2:225462/132‑1 (MQ=255)
                         cGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGcc                                                                                                          >  2:220652/1‑150 (MQ=255)
                         cGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGcc                                                                                                          >  1:1159326/1‑150 (MQ=255)
                          gCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCgg                                                                                                                                     <  1:1557997/123‑1 (MQ=255)
                          gCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCgg                                                                                                                                     >  2:1557997/1‑123 (MQ=255)
                                  tACNAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCAACTCCCCCAACACAGGCAAAGCCGGTGCCATc                                                                                                 >  2:1185632/1‑150 (MQ=255)
                                  tACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATc                                                                                                 >  2:60012/1‑150 (MQ=255)
                                        catgggcttgcccatgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGa                                                                                           <  2:245585‑M1/55‑1 (MQ=255)
                                         gCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAAAGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAg                                                                                          <  2:543334/150‑1 (MQ=255)
                                          cTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCGGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGt                                                                                         <  1:717054/150‑1 (MQ=255)
                                               tgggCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCt                                                                                    <  1:60012/150‑1 (MQ=255)
                                                      tgatgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTcgc                                                                             >  1:260889‑M1/82‑150 (MQ=255)
                                                        atgccggtgccgatgaaaccgattttagccatgagaaattacctctttttaattgtgatatctcaagcaagcttttgccCCCTGTGGGAGCCGGCTCCCCCGCGAACCCCGGCCAAGCCGCTCCCCTCCACCGAGTTGTCCgcttctctg                                                                           >  2:25139‑M1/80‑146 (MQ=255)
                                                        atgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCgg                                                                           >  1:245585‑M1/80‑150 (MQ=255)
                                                        atgccggtgccgatgaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCgg                                                                           >  1:1415111‑M1/80‑150 (MQ=255)
                                                        aGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCgg                                                                           <  1:617738/150‑1 (MQ=255)
                                                        aGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCgg                                                                           <  2:1587957/150‑1 (MQ=255)
                                                         gTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCggg                                                                          <  1:52159/150‑1 (MQ=255)
                                                            cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACTCAATCTGAGGAACAACTCGGGACCCTGTGGGa                                                                                                                                         <  2:370401/85‑1 (MQ=255)
                                                            cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGa                                                                                                                                         >  1:370401/1‑85 (MQ=255)
                                                            cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGa                                                                       >  1:1769332/1‑150 (MQ=255)
                                                             aaGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGa                                                                                                                                         >  1:807644/1‑84 (MQ=255)
                                                             aaGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGa                                                                                                                                         <  2:807644/84‑1 (MQ=255)
                                                                    tGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTc                                                               <  1:370252/150‑1 (MQ=255)
                                                                      gaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCtgt                                                                                                                                             >  2:594183‑M1/66‑71 (MQ=255)
                                                                      gaaaccgattttagccatgagaaattacctctttgtaattgtgatatctcaagcaagctttggccCCCtgt                                                                                                                                             <  1:594183‑M1/6‑1 (MQ=255)
                                                                      accaccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTccc                                                             <  2:1769332/150‑1 (MQ=255)
                                                                       ccaccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACGACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCca                                                            <  1:1623757/150‑1 (MQ=255)
                                                                       ccaccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCca                                                            <  1:183999/150‑1 (MQ=255)
                                                                        caccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCcac                                                           >  2:104606/1‑150 (MQ=255)
                                                                             ccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCAGGGATTGGTCTGCTTCGCGGGCGAGCCCGCTCCCACAgggg                                                      >  1:1534846/1‑150 (MQ=255)
                                                                                     ggCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGCGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAgc                                              <  1:903465/150‑1 (MQ=255)
                                                                                              tggctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGCGAGGGCTCGCCCGCGAACACCGGCAAAGCCGTTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgag                                     <  2:1159326/150‑1 (MQ=255)
                                                                                                  ctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCgg                                                                           >  2:13991‑M1/38‑108 (MQ=255)
                                                                                                  ctctttgtaattgtgatatctcaagcaagctttggccCCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCgg                                                                           <  1:13991‑M1/71‑1 (MQ=255)
                                                                                                         ccACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGccc                                                                                                                             >  1:1289724/1‑52 (MQ=255)
                                                                                                         ccACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGccc                                                                                                                             <  2:1289724/52‑1 (MQ=255)
                                                                                                         ccACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAAtt                          >  2:1661997/1‑150 (MQ=255)
                                                                                                              aCGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACaaa                     <  1:1661997/150‑1 (MQ=255)
                                                                                                                  aaTCTGAGGAACAACTCGGGACCCTGTGGGAGAGGGATCGCCCGTCACATAGCATCGATCTGGAGCTAGCCACTCAGAGGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAgg                 >  1:513578/1‑150 (MQ=255)
                                                                                                                      tGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAAt             <  2:1863225/150‑1 (MQ=255)
                                                                                                                        aGGAACAACTCGGGACCCTGTGGGAGCGGGCCCGCACGCGAAGACCGGCAAAGCCCGGGCCATCCCCCGACTGGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGCGCCACAACTTGCTTGAGATCTCACCATTACAAAGCGGTAAatt           >  2:656626/1‑150 (MQ=255)
                                                                                                                             caacTCGGGACCCTATGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTcgcg                                                                            <  2:1901488/80‑1 (MQ=255)
                                                                                                                             caacTCGGGACCCTATGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTcgcg                                                                            >  1:1901488/1‑80 (MQ=255)
                                                                                                                                 tCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCt  >  2:596298/1‑150 (MQ=255)
                                                                                                                                       |                                                                                                                                                
CCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCT  >  NC_002947/4889479‑4889757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.