| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4889614 = | 50 (0.670) | 7 (0.120) | 4/200 | NT | 16.0% | intergenic (+15/‑138) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase |
| ? | NC_002947 | 4889705 = | 34 (0.580) | intergenic (+106/‑47) | hyi/glxR | hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase | |||||
CCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTT > NC_002947/4889556‑4889839 | ccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCAGGGATTGGTCTGCTTCGCGGGCGAGCCCGCTCCCACAgggg > 1:1534846/1‑150 (MQ=255) ggCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGCGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAgc < 1:903465/150‑1 (MQ=255) tggctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGCGAGGGCTCGCCCG‑CGAACACCGGCAAAGCCGTTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTgag < 2:1159326/150‑1 (MQ=255) ccACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAAtt > 2:1661997/1‑150 (MQ=255) aCGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACaaa < 1:1661997/150‑1 (MQ=255) aaTCTGAGGAACAACTCGGGACCCTGTGGGAGAGGGATCGCCCGTCACATAGCATC‑GATCTGGAGCTAGCCACTCAGAGGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAgg > 1:513578/1‑150 (MQ=255) tGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAAt < 2:1863225/150‑1 (MQ=255) aGGAACAACTCGGGACCCTGTGGGAGCGGGCCCGCACG‑CGAAGACCGGCAAAGCCCGGGCCATCCCCCGACTGGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGCGCCACAACTTGCTTGAGATCTCACCATTACAAAGCGGTAAatt > 2:656626/1‑150 (MQ=255) tCGGGACCCTGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCt > 2:596298/1‑150 (MQ=255) ggtgttcGCGGGCGAGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGt < 1:1640684‑M1/143‑1 (MQ=255) gGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGt > 2:1247206‑M1/2‑150 (MQ=255) TGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGttt < 2:317215‑M1/150‑1 (MQ=255) GGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCa < 1:1085327‑M1/150‑1 (MQ=255) CCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGca < 1:1341106‑M1/150‑1 (MQ=255) CCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATc < 1:1205362‑M1/139‑1 (MQ=255) CCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATc > 2:1205362‑M1/1‑139 (MQ=255) ccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAagag > 2:13991‑M2/72‑108 (MQ=255) ccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAagag < 1:13991‑M2/37‑1 (MQ=255) ccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat > 1:1415111‑M2/72‑150 (MQ=255) ccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat > 1:245585‑M2/72‑150 (MQ=255) cagagaagcggacaactcggtggaggggagcggcttggccggggttcgcgggggagccggctcccacagggGGCAAAAGCTTGCTTGAGATATCACAATTAAAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcat > 2:25139‑M2/72‑150 (MQ=255) gcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatca > 1:260889‑M2/70‑150 (MQ=255) ACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATggg > 1:596298‑M1/1‑150 (MQ=255) cacCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATCGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGc > 2:110841/1‑150 (MQ=255) acCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCAt < 2:621874/130‑1 (MQ=255) acCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCAt > 1:621874/1‑130 (MQ=255) ccGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATca < 1:640868/86‑1 (MQ=255) ccGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATca > 2:640868/1‑86 (MQ=255) ccGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTATAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATggg > 2:1584485/1‑147 (MQ=255) ccGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCg < 2:1688945/122‑1 (MQ=255) ccGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCg > 1:1688945/1‑122 (MQ=255) ccGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATggg < 1:1584485/147‑1 (MQ=255) cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACaa < 2:1650657/94‑1 (MQ=255) cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACaa > 1:1650657/1‑94 (MQ=255) cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAg > 1:114853/1‑150 (MQ=255) cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAg > 1:1884498/1‑150 (MQ=255) gCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATgg < 2:586215/143‑1 (MQ=255) gCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATgg > 1:586215/1‑143 (MQ=255) aaGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATCGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCAt < 1:110841/150‑1 (MQ=255) tcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATg < 2:245585‑M2/95‑1 (MQ=255) aGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAagag > 1:1816307/1‑92 (MQ=255) aGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAagag < 2:1816307/92‑1 (MQ=255) gCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCTTGCCCATga < 1:104606/150‑2 (MQ=255) gCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCTTGCCCATga < 1:220652/150‑2 (MQ=255) gAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaaa < 1:47817/150‑1 (MQ=255) gAGTTGTCTGCTTCGCAGGGGCGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAAGCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCaaac < 2:1534846/150‑2 (MQ=255) gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCAt < 2:805020/130‑1 (MQ=255) gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCAt > 1:805020/1‑130 (MQ=255) gTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAgg > 2:836737/1‑150 (MQ=255) tGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCa < 2:114853/150‑1 (MQ=255) tCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCAATGGCTCAGAACCTGCAAAAGGCAgg > 2:569444/1‑150 (MQ=255) cTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGt < 2:513578/150‑1 (MQ=255) cTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATc > 2:454660/1‑96 (MQ=255) cTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATc < 1:454660/96‑1 (MQ=255) ttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTcaca < 1:317215‑M2/123‑1 (MQ=255) tcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAg < 1:1325353‑M2/124‑1 (MQ=255) cgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCt < 2:1085327‑M2/127‑1 (MQ=255) cgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCt > 1:1247529‑M2/24‑150 (MQ=255) gagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCa > 2:70620‑M2/19‑150 (MQ=255) gagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCa > 2:952345‑M2/19‑150 (MQ=255) cccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCAttt > 1:1226135‑M2/16‑150 (MQ=255) acagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTc > 2:594183‑M2/7‑71 (MQ=255) acagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTc < 1:594183‑M2/65‑1 (MQ=255) agggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCAATGGCTCAGAACCTGCAAAAGGCAGGTCACAGcc > 2:666898‑M2/5‑130 (MQ=255) agggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCAATGGCTCAGAACCTGCAAAAGGCAGGTCACAGcc < 1:666898‑M2/126‑1 (MQ=255) | CCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCG‑CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTT > NC_002947/4889556‑4889839 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |