| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5219047 | 9 (0.120) | 4 (0.060) | 4/242 | NT | 31.8% | intergenic (+147/‑102) | PP_4598/PP_4599 | membrane protein/transposase |
| ? | NC_002947 | = 5219103 | NA (NA) | intergenic (+203/‑46) | PP_4598/PP_4599 | membrane protein/transposase | |||||
GGTGGGTGGTTGCCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTCGCGAGCAAGCGACAATAGAAGCAAGCCTGCGCCAGGGTGTGCCCTTCAAGTCACACTACGCTACAAGGAGCAGCTATTCATGGCAATGTCCGCAATCCCAATCGAAGCTGGCGTGGACACCTCCAAA > NC_002947/5218902‑5219196 | ggtnggtgGTTGCCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTCCAACACCCAAgc > 2:1196612/1‑150 (MQ=255) tgggtggTTGCCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGACGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAgcgc < 2:1491237/150‑1 (MQ=255) tgggtggTTGCCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAgcgc > 2:656543/1‑150 (MQ=255) gtggtTGCCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGa > 2:1833242/1‑150 (MQ=40) tGCCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAgg < 1:168690/150‑1 (MQ=37) gCCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTAGTATGGTAGGACTTGAAGTGAGTAGGAGGGCCATAAGTGGCTTCTGAATGAGCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGa > 1:1571707/1‑150 (MQ=11) ccTGTTCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGaa < 1:1833242/150‑1 (MQ=35) cTGTTCTGGCCTCATCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAAt < 1:662348/150‑1 (MQ=25) ttCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGcc < 2:860628/150‑1 (MQ=32) ttCTGGCCTCTTCGCGGGTAAAACCGCTTGTATGGGAGGACTTGAGGGGAGGAGGAGGGCCATGACTCGATTCTGACTGTTCGCGCGGTACAGACCGTAGGAGAAAGCACCCCTCCTCCTTTCCACACCGCAGCGCCGATAAGGAATGcc > 2:1641759/1‑150 (MQ=11) ctctTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCtggcgcaggcttgcttctattgtcgct > 1:1648003‑M1/1‑123 (MQ=255) gAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgtt < 2:1648003‑M1/150‑64 (MQ=255) gagaAATCACCCCTCCTCCTTTCAACACCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgt > 2:67925‑M1/1‑30 (MQ=255) gagaAATCACCCCTCCTCCTTTCAACACCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgt < 1:67925‑M1/92‑63 (MQ=255) cagaccctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttc < 2:546943‑M1/147‑144 (MQ=255) acacCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttca > 1:717233‑M1/1‑6 (MQ=255) acacCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttat > 2:1205926‑M1/1‑6 (MQ=255) acacCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttat < 1:1205926‑M1/54‑49 (MQ=255) cacCCtgtcgcaggctagcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggcgctcctcctcccttcaa < 2:974175‑M1/150‑146 (MQ=255) cacCCtggcgcaggcttgctttcatcgtcgcttgctcgcgaagcattccttatcggcgcttgggtgttgacaggaggaggggtgttttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaa < 2:1534473‑M1/150‑146 (MQ=255) cacCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaa < 1:820982‑M1/150‑146 (MQ=255) cacCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaa < 2:1687209‑M1/150‑146 (MQ=255) cacCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaa < 2:1826184‑M1/150‑146 (MQ=255) cacCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaa > 2:132081‑M1/1‑5 (MQ=255) cacCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaa > 1:1652488‑M1/1‑5 (MQ=255) acCCtggctcaggcttgcttcgattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaacgagggggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaag > 2:1061158‑M1/1‑4 (MQ=255) acCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattcgttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctggactgcgcgaacagtcagaagggagttatggccctcctcctcccttcagg > 2:981580‑M1/1‑4 (MQ=255) acCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaag > 1:1063875‑M1/1‑4 (MQ=255) acCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaa > 1:238764‑M1/1‑4 (MQ=255) acCCtggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaa < 2:238764‑M1/111‑108 (MQ=255) ccctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagt < 1:139302‑M1/150‑148 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtc > 2:1208522‑M1/1‑2 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtc > 1:979024‑M1/1‑2 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtc > 2:1718010‑M1/1‑2 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtc > 1:1598314‑M1/1‑2 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtc > 1:1265917‑M1/1‑2 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcc < 1:319211‑M1/141‑140 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcc > 2:319211‑M1/1‑2 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagtgatggccctcctcctcccttcaagtc > 1:1240869‑M1/1‑2 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtatgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtc > 2:990511‑M1/1‑2 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggagggg < 2:362439‑M1/79‑78 (MQ=255) cctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggagggg > 1:362439‑M1/1‑2 (MQ=255) cctcgcgcatgcttgcttatattgtcgcttgctcgcgaggcaccccttatcggcgcttgggtgttgaaaggaggaggggcgacttctcctacgggctgtactgcgcggacagccagaagcgcgttatggccctcctcctaccttcaagtc > 2:811185‑M1/1‑2 (MQ=255) ctggcgcaggcttgcttctattgtcgcttgctcgttaggcattccttatcggcgcatgggtgttgaaaggaggagggatgatttctcctacggtctgcactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcc < 1:304010‑M1/150‑150 (MQ=255) ctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttggaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcc > 1:1196612‑M1/1‑1 (MQ=255) ctggcgcaggcttgcttctattgtcgcttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcc > 2:548895‑M1/1‑1 (MQ=255) | GGTGGGTGGTTGCCTGTTCTGGCCTCTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATAAGGAATGCCTCGCGAGCAAGCGACAATAGAAGCAAGCCTGCGCCAGGGTGTGCCCTTCAAGTCACACTACGCTACAAGGAGCAGCTATTCATGGCAATGTCCGCAATCCCAATCGAAGCTGGCGTGGACACCTCCAAA > NC_002947/5218902‑5219196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |