New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5453186	3 (0.040)	8 (0.170) +CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA	12/158	NT	30.7%	intergenic (+151/‑204)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase
	?	NC_002947	5545674 =	55 (0.740)					intergenic (‑766/+111)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

CGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCC  >  NC_002947/5453040‑5453269                                                                                                                                                    |                                                                                    cGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCt                                                                                  <  1:1415640/150‑1 (MQ=40)  gATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCtt                                                                                 >  2:1278020/1‑150 (MQ=39)   aTACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt                                                                                <  2:191357/150‑1 (MQ=38)   aTACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTCGATCGCAGGGTA‑GCGGTCTGCCCTGGAGGGCCAGCCGCCTATTGCttt                                                                                >  2:1453120/1‑150 (MQ=11)       gcgACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTa                                                                            <  1:1268120/150‑1 (MQ=35)       gcgACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTa                                                                            <  2:1818259/150‑1 (MQ=35)            cACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGtt                                                                       >  2:754226/1‑150 (MQ=31)              ccgtaGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaa                                                                            <  2:995266‑M1/141‑10 (MQ=255)              ccgtaGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaa                                                                            >  1:995266‑M1/3‑134 (MQ=255)               ggtAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTctttttcaaaatgtcag                                                                    <  2:203587‑M1/149‑18 (MQ=255)                                           tGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTc                                                                                    >  1:712050‑M1/1‑105 (MQ=255)                                           tGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTc                                                                                    <  2:712050‑M1/106‑2 (MQ=255)                                                                                                                     ggCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaa        <  2:1588062‑M1/109‑78 (MQ=255)                                                                                                                     ggCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaa        >  1:1588062‑M1/1‑32 (MQ=255)                                                                                                                      gCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgct                             <  1:650958‑M1/87‑57 (MQ=255)                                                                                                                      gCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgct                             >  2:650958‑M1/1‑31 (MQ=255)                                                                                                                        ggTTGGCCCGGTAGGGCCAACCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctg  <  2:102450‑M1/112‑84 (MQ=255)                                                                                                                        ggTTGGCCCGGTAGGGCCAACCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagggctg  >  1:102450‑M1/1‑29 (MQ=255)                                                                                                                         gTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagg      <  2:1433341‑M1/107‑80 (MQ=255)                                                                                                                         gTTGGCCCGGTAGGGCCAGCCGCCTTTTctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttgctgcgcgacagcgcagcccggaagg      >  1:1433341‑M1/1‑28 (MQ=255)                                                                                                                                                 ttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgta                                            <  2:1814334‑M1/45‑42 (MQ=255)                                                                                                                                                 ttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgta                                            >  1:1814334‑M1/1‑4 (MQ=255)                                                                                                                                                    |                                                                                    CGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGA‑AAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCC  >  NC_002947/5453040‑5453269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.