| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 181541 | NA (NA) | 10 (0.140) | 10/246 | NT | NA | intergenic (+7/‑126) | PP_23SB/PP_r01 | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_002947 | = 529685 | NA (NA) | intergenic (+18/‑102) | PP_23SC/PP_5SC | 23S ribosomal RNA/5S ribosomal RNA | |||||
TCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCG > NC_002947/529540‑529830 | aatgctctatggtcgtcaagaaattctgttgccagaatgtccagatggacagcccagcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccGCAATCTGCTACGCAGATtg < 2:664658‑M1/20‑1 (MQ=255) tgctctatggtcgtcaagaaattctgttgccagaatgtccagatggacagcccagcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccGCAATCTGCTACGCAGattgcg > 1:664658‑M1/129‑148 (MQ=255) tctatggtcgtcaagaaattctgttgccagaatgtccagatggacagcccagcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccGCAATCTGCTACGCAGATTgcggtg > 2:1430974‑M1/126‑150 (MQ=255) tcaagaaattctgttgccagaatgtccagatggacagcccagcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgacttttcgggtctttcgtcttcaccaccACAATCTGCTACGCAGATTgtgg > 2:741461‑M1/116‑138 (MQ=255) tcaagaaattctgttgccagaatgtccagatggacagcccagcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccACAATCTGCTACGCAGATTgtgg < 1:741461‑M1/23‑1 (MQ=255) aagaaattctgttgccagaatgtccagatggacagcccagcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccGCAATCTGCTACGCAGATTGCGGTGGTGAAGACGaaa > 1:109833‑M1/114‑150 (MQ=255) aagaaattctgttgccagaatgtccagatggacagcccagcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccACAATCTGCTACGCAGATTGTGGTGGTGAAGACGaaa > 1:1133218‑M1/114‑150 (MQ=255) aCTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGc < 1:913215/150‑1 (MQ=33) tACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCca > 2:817372/1‑150 (MQ=35) gacgTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACaa > 1:12608/1‑150 (MQ=38) gTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAata > 1:210343/1‑150 (MQ=40) tGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATc < 2:632055/150‑1 (MQ=255) tGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATc < 1:199480/150‑1 (MQ=255) gTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCatat < 2:797042/150‑1 (MQ=255) ttGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATc < 1:817372/150‑1 (MQ=255) tGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATcc < 2:1505240/150‑1 (MQ=255) gcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccGCAATCTGCTACGCAGATTGTGGTGGTGAAGAc > 1:167723‑M1/75‑107 (MQ=255) gcgaattcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccGCAATCTGCTACGCAGATTGTGGTGGTGAAGAc < 2:167723‑M1/33‑1 (MQ=255) ggTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATc > 2:341051/1‑140 (MQ=255) ggTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATc < 1:341051/140‑1 (MQ=255) ttcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccGCAATCTGCTACGCAGATTGTGGTGGTGAAGa > 1:17940‑M1/70‑101 (MQ=255) ttcggatatgcgatatttgcgaagctcttgtgtaaagcacgaattttcgggtctttcgtcttcaccaccGCAATCTGCTACGCAGATTGTGGTGGTGAAGa < 2:17940‑M1/32‑1 (MQ=255) tAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGACTTCGc > 1:1323934/1‑150 (MQ=255) tAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGc > 2:764394/1‑150 (MQ=255) aaGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCt < 1:199498/150‑1 (MQ=255) gcgcTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTgg < 1:1155105/150‑1 (MQ=255) cgcTGTGAGGCGTTGAGCTAACAAATACTAATTGCCCGTGAGGCTTGACCAGATAACACCCAAGCAATCTGCTACGTAGATTGTGGTGGTGAAGACGAAAGACCCGAAAAATCGTAAGGCCACAAATATCGCATATCCGAATTCGCTggg < 2:645807/150‑1 (MQ=255) tgtgAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTg > 2:1288239/1‑150 (MQ=255) cGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCt < 1:1585722/150‑1 (MQ=255) gTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTg > 1:1232209/1‑150 (MQ=255) cTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACAtt > 1:741574/1‑150 (MQ=255) caCCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg > 1:1500012/2‑129 (MQ=255) aaCCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg < 2:1500012/129‑1 (MQ=255) aCCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTTGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg < 1:647843/150‑1 (MQ=255) aCCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTg < 2:1447100/150‑1 (MQ=255) cAATACTAATTGCCCGTGTTCGGTTACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGCCCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGc < 1:97103/150‑1 (MQ=21) cAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGTCTGTCCATCTGGACATTCTGGc > 2:417447/1‑150 (MQ=255) aTACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTAGGCAGATTGTGGTGGTGAAGAGGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGAACATTCTGGCaa > 2:1056367/1‑150 (MQ=255) aTACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCaa < 1:1301899/150‑1 (MQ=255) aCTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGt > 2:745584/1‑128 (MQ=255) aCTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGt < 1:745584/128‑1 (MQ=255) tAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGa > 1:1114221/1‑150 (MQ=255) aTTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAAt < 1:764394/150‑1 (MQ=255) ccGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCtt < 2:1232209/150‑1 (MQ=255) tGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTgac < 2:1114221/150‑1 (MQ=255) gCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGAcc > 1:1182113/1‑150 (MQ=255) gCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGAcc > 2:536784/1‑150 (MQ=255) ccATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg > 2:1176941/1‑100 (MQ=255) ccATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg < 1:1176941/100‑1 (MQ=255) atatAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg < 2:1889007/98‑1 (MQ=255) atatAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg > 1:1889007/1‑98 (MQ=255) atatAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCa > 2:1746149/1‑150 (MQ=255) aaCACCCAAGCAATCTGCTACGCAGATGGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTgg > 2:1550901/1‑150 (MQ=255) accaccACAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAac < 1:130619‑M1/144‑1 (MQ=255) ccAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg < 1:718743/89‑1 (MQ=255) ccAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTg > 2:718743/1‑89 (MQ=255) cAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCGGAAAATTCGCAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAAGAAAATTTCTTGACGACCATAGAGCATTGGAaccac < 1:1590053/150‑1 (MQ=255) cAAGCAATCGGCTACGCAGATTGTGGTGGTGAAGACGACAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAaccac < 1:581390/150‑1 (MQ=255) aaGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACa > 2:875147/1‑104 (MQ=255) aaGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACa < 1:875147/104‑1 (MQ=255) aaGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAaccacc > 2:751801/1‑150 (MQ=255) cTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACaaa > 2:1029297/1‑55 (MQ=255) cTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACaaa < 1:1029297/55‑1 (MQ=255) cGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCg > 1:1215166/1‑150 (MQ=255) | TCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCCAAGCAATCTGCTACGCAGATTGTGGTGGTGAAGACGAAAGACCCGAAAATTCGTAAGGCCACAAATATCGCATATCCGAATTCGCTGGGCTGTCCATCTGGACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCG > NC_002947/529540‑529830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |