| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1780109 = | 33 (0.440) | 15 (0.240) | 12/216 | NT | 41.6% | intergenic (+26/+80) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| ? | NC_002947 | 1780171 = | 14 (0.220) | intergenic (+88/+18) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase | |||||
GTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCC > NC_002947/1780024‑1780320 | gtgCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGc < 2:1635375/150‑1 (MQ=255) tgCGGCAAGTACTGGGTGAGCTGGATATGACTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAG‑CGCAGCGCAGTACCTGTGGGAGCGGGCGCGcc > 2:1119762/1‑150 (MQ=17) aaGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑ATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGaa < 1:1119762/150‑1 (MQ=14) aGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAg < 1:720045/150‑1 (MQ=255) gCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGGA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt > 2:1596914/1‑142 (MQ=255) gCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGGA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt < 1:1596914/142‑1 (MQ=255) cGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGgcg > 1:110378/1‑150 (MQ=255) cTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAAt > 1:1602160/1‑150 (MQ=255) ggTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCa < 1:301157/123‑1 (MQ=255) ggTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCa > 2:301157/1‑123 (MQ=255) tCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACCGCAACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAGGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTccgcc > 1:1294343/1‑150 (MQ=255) CCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAggg < 2:1739929‑M1/72‑1 (MQ=255) CCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAggg > 1:1739929‑M1/1‑72 (MQ=255) CTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGCTGCATTCGGCCAGCGGTGCAACCAGTGCCATg < 1:178713‑M1/150‑1 (MQ=255) TCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc < 1:1008491‑M1/150‑1 (MQ=255) cacaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCa > 2:356578‑M2/53‑150 (MQ=255) ACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAc < 1:1910696‑M1/150‑1 (MQ=255) ACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACATGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGGTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAc < 2:1340883‑M1/150‑1 (MQ=255) acaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAg > 2:382529‑M2/52‑88 (MQ=255) acaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAg < 1:382529‑M2/37‑1 (MQ=255) acaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCcgccgc < 1:1541055‑M2/57‑1 (MQ=255) acaggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCcgccgc > 2:1541055‑M2/52‑108 (MQ=255) aggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc > 2:1544125‑M2/50‑144 (MQ=255) aggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc < 1:1544125‑M2/95‑1 (MQ=255) aggtacagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAcgc > 2:1771834‑M2/50‑150 (MQ=255) ccataggtacagcgctgatttcaagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGc < 1:155182‑M2/90‑1 (MQ=255) ccataggtacagcgctgatttcaagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGc > 2:155182‑M2/49‑138 (MQ=255) ACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGCTTCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGccc < 1:406593‑M1/150‑1 (MQ=255) acagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGtt > 2:379519‑M2/46‑61 (MQ=255) acagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGtt < 1:379519‑M2/16‑1 (MQ=255) acagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTc < 1:1206788‑M2/51‑1 (MQ=255) acagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTc > 2:1206788‑M2/46‑96 (MQ=255) CTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCg > 2:1008491‑M1/1‑150 (MQ=255) cagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgCGCCCGCGAAGGGGTTGATCAGc < 2:990097‑M2/23‑1 (MQ=255) ttGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGa < 1:29296/95‑1 (MQ=255) ttGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGa > 2:29296/1‑95 (MQ=255) a‑aTCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCtt < 2:569925/88‑1 (MQ=255) a‑aTCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCtt > 1:569925/1‑88 (MQ=255) aGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCAt > 2:1111870/1‑150 (MQ=255) gcgcTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATc < 1:1711624/150‑1 (MQ=255) gcTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAGCCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCa > 2:249767/1‑150 (MQ=255) cTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCAc > 1:443331/1‑150 (MQ=255) tGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACt > 2:1583796/1‑150 (MQ=255) tGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACt > 2:1588448/1‑150 (MQ=255) ctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcg > 1:89469‑M2/16‑150 (MQ=255) ctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcg > 1:1396935‑M2/16‑150 (MQ=255) cgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTa > 2:1213829‑M2/7‑150 (MQ=255) gggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCAc < 1:1379467‑M2/120‑1 (MQ=255) gggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCAc > 2:1379467‑M2/6‑125 (MQ=255) tGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGAccc < 1:1588448/150‑1 (MQ=255) tGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGAccc < 1:1583796/150‑1 (MQ=255) tGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAAAGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGCTCAGTCAAGTGCCATGCGCACGCGCCAGGACCGCAAGACACCCCCATCCACTGCATGCGGCAGGTACGAccc > 1:1772736/1‑150 (MQ=255) | GTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTACGACCC > NC_002947/1780024‑1780320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |