New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5816894 =	26 (0.350)	13 (0.180)	10/244	NT	26.5%	intergenic (+24/+105)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816989 =	47 (0.660)					intergenic (+119/+10)	PP_5092/pilT	NLP/P60 protein/twitching motility protein

AGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTACGCA  >  NC_002947/5816842‑5817132                                                                                                                                                     |                                                                                                                                                agcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑Cttt                                                                                                                                               >  1:1903194/1‑150 (MQ=255)     gcagcTGAGTCTGGCCAAGCGTTAAGCTGCTCGACGTCTTCCGGTACCGGCCCCTGCGCTGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAg                                                                                                                                           <  2:1893789/150‑1 (MQ=39)      cagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAgg                                                                                                                                          <  2:1903194/150‑1 (MQ=255)                  gCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCt                                                                                                                              <  1:1727771/150‑1 (MQ=255)                   ccAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCtt                                                                                                                             >  2:1443399/1‑150 (MQ=255)                       gCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGAt                                                                                                                         <  1:1443399/150‑1 (MQ=255)                                     ggCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTCCTACATGCCTCTCATCAACTCACGGTccc                                                                                                           >  2:240522/1‑150 (MQ=37)                                     ggCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTccc                                                                                                           >  1:876635/1‑150 (MQ=255)                                                   ccGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCGCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑ATTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAAc                                                                                             <  1:240522/150‑1 (MQ=255)                                                                  gCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTTCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTc                                                                              >  2:357620/1‑150 (MQ=255)                                                                   gcgcgcccgctcccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtcggagcgggcgcgcccgcgaaagggccTTTGCAGGTACTACAAGCCTTCGTTCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCCCCATCGTc                                                                              >  1:681888‑M2/83‑150 (MQ=255)                                                                       cccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCCGGAACTCCAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCCCCATCGTCAGCac                                                                         >  1:1737161/1‑149 (MQ=255)                                                                        ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAg                                                                                                                                           >  1:1824017/1‑83 (MQ=255)                                                                        ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAg                                                                                                                                           <  2:1824017/83‑1 (MQ=255)                                                                        ccGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATc                                                                        >  1:13830/1‑150 (MQ=255)                                                                              ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGTTCCCTCAGCCTCCGCAACGCCACCTCCCTCGTCAGCATCcccccc                                                                  >  1:1646675/1‑150 (MQ=255)                                                                              ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTcc                                                                  >  2:1374510/1‑150 (MQ=255)                                                                              ccACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCACGAGAAAAGGCACTTGGTATATGGTTGTTCTCTCAAAT‑AAGACTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCACCCCCGcc                                                                  >  1:432239/1‑150 (MQ=255)                                                                               ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                                                  >  2:623273‑M2/71‑118 (MQ=255)                                                                               ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTcc                                                                                                  <  1:623273‑M2/48‑1 (MQ=255)                                                                               ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCt                                                                                      >  1:1326820‑M2/71‑130 (MQ=255)                                                                               ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCt                                                                                      <  2:1326820‑M2/60‑1 (MQ=255)                                                                               ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCa                                                                          <  2:132595‑M2/72‑1 (MQ=255)                                                                               ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCa                                                                          >  1:132595‑M2/71‑142 (MQ=255)                                                                               cacaGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccg                                                                 >  1:864489/1‑150 (MQ=255)                                                                                cacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCCGCATccc                                                                      >  2:1355462‑M2/70‑145 (MQ=255)                                                                                cacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATccc                                                                      <  1:1355462‑M2/76‑1 (MQ=255)                                                                                 acatgtatgtgatctgcgcccgagagcgacgctctacctgtgggagcgggcgcgcccgcgaaagggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccgc                                                                >  2:551239‑M2/69‑150 (MQ=255)                                                                                  aGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCa                                                                          <  2:1098931/138‑1 (MQ=255)                                                                                  aGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCa                                                                          >  1:1098931/1‑138 (MQ=255)                                                                                   aggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgtgcccgcgaaagggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccgccg                                                              >  1:1435932‑M2/67‑150 (MQ=255)                                                                                    gTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCCCCgccccc                                                            >  2:1634487/1‑150 (MQ=255)                                                                                         gcgTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGccgccccgcc                                                       >  2:145461/1‑150 (MQ=255)                                                                                           gTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                                                     >  2:1821360/1‑150 (MQ=255)                                                                                           gTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                                                     >  2:1778792/1‑150 (MQ=255)                                                                                                 ctcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCa                                               <  1:1821360/150‑1 (MQ=255)                                                                                                  tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGtactac                                                                                                                                    >  1:149245/1‑64 (MQ=255)                                                                                                  tcGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGtactac                                                                                                                                    <  2:149245/64‑1 (MQ=255)                                                                                                     cgcgcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGa                                           >  1:1913602/1‑150 (MQ=255)                                                                                                     cgcgcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGa                                           <  1:145461/150‑1 (MQ=255)                                                                                                      gcgcAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                                          <  2:864489/150‑1 (MQ=255)                                                                                                         cAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGAc                                       >  2:691914/1‑150 (MQ=255)                                                                                                           gCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCATCCGCCGCCCCGCCCCGCCTCACTGAAGAcca                                     >  2:1258407/1‑148 (MQ=255)                                                                                                              cacaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACt                                             <  2:31582/139‑1 (MQ=255)                                                                                                              cacaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACt                                             >  1:31582/1‑139 (MQ=255)                                                                                                               acaTACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTgc                                 <  2:876635/150‑1 (MQ=255)                                                                                                                  tACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                                          <  2:1624220/138‑1 (MQ=255)                                                                                                                  tACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                                          >  1:1624220/1‑138 (MQ=255)                                                                                                                   tacctgtgggagcgggcgtgcccgcgaaagggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGcc                              <  2:1435932‑M2/116‑1 (MQ=255)                                                                                                                    ccTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCaa                            <  2:1752754/150‑1 (MQ=255)                                                                                                                        tgGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGc                        <  1:691914/150‑1 (MQ=255)                                                                                                                        tgGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGc                        <  1:551239/150‑1 (MQ=255)                                                                                                                         tgggagcgggcgtgcccgcgaaggggccTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGc                        >  1:471545‑M2/29‑150 (MQ=255)                                                                                                                             gCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCATCTCCCCCTCCATTGTCAGTATTCCCTCCCCCGCCCTTCCCTTGATCACTGAAGACATCTGCGCCTACCGccaaaa                   >  2:1841992/1‑146 (MQ=255)                                                                                                                              cGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAAACAACTGCGCCAACCGCcccccc                  >  2:55367/1‑150 (MQ=255)                                                                                                                                       ccGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGa                                        >  2:1334746/1‑119 (MQ=255)                                                                                                                                       ccGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGa                                        <  1:1334746/119‑1 (MQ=255)                                                                                                                                       ccGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCCCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAgg         >  1:1567561/1‑150 (MQ=255)                                                                                                                                       ccGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCCCCCTCAGCCTCCGCAACGCCCCCTCCCTCGTCAGCATCCCCTCCACCGCCCCGCCCTGCACCCCCGAAGACAACTGCGCCAACCGCCCCCCCCCAACCAgg         >  2:248966/1‑150 (MQ=255)                                                                                                                                       ccGCGAAAGGGC‑CTTTGCAAGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTgc                                 >  1:673918/1‑126 (MQ=255)                                                                                                                                       ccGCGAAAGGGC‑CTTTGCAAGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTgc                                 <  2:673918/126‑1 (MQ=255)                                                                                                                                           gAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTAc     >  1:45365/1‑150 (MQ=255)                                                                                                                                           gAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCCGCATCACTGAAGACAACTGCGCCAACCGCCCCCCCCGAACCAGGGTAc     >  1:1250958/1‑150 (MQ=255)                                                                                                                                           gAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCACCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTAc     >  1:1203459/1‑150 (MQ=255)                                                                                                                                              aGGGC‑CTTTGCAGGTACTACAAGCCTTTGCTCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCCCCCCCCCCCCACCCGGTTACGcc  >  2:61134/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                AGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTCACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGC‑CTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAACCAGGTTACGCA  >  NC_002947/5816842‑5817132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.