| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6006630 | 23 (0.310) | 20 (0.370) | 15/182 | NT | 52.3% | intergenic (+42/+57) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | = 6006642 | 20 (0.370) | intergenic (+54/+45) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
TGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGG > NC_002947/6006497‑6006787 | tGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacct > 1:1705569‑M2/1‑146 (MQ=255) aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtg > 1:1460239‑M2/1‑143 (MQ=255) ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtgg > 1:1752652‑M2/1‑142 (MQ=255) aGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcg > 1:726991‑M2/1‑137 (MQ=255) ggATGAGCTGGGGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTGGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtgggancgg > 2:1189839‑M2/1‑136 (MQ=255) ggATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcgg > 1:198552‑M2/1‑136 (MQ=255) gcgcTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCG‑TATGCCCTGTacctgtgggagcgggcgagcccgc < 2:1536814‑M2/150‑25 (MQ=255) tGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTcctgtgggagcgggcgagcccgcgaagaggc > 1:1536814‑M2/1‑119 (MQ=255) cAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgc > 1:1302501‑M2/1‑93 (MQ=255) cAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgc < 2:1302501‑M2/117‑25 (MQ=255) cGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtgg < 2:1718942‑M2/54‑9 (MQ=255) cGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGacctgtgg > 1:1718942‑M2/1‑46 (MQ=255) gCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCgg < 1:165701/88‑1 (MQ=255) gCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCgg > 2:165701/1‑88 (MQ=255) gCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt < 2:811870/116‑1 (MQ=255) gCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCAtt > 1:811870/1‑116 (MQ=255) tCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAg < 2:761371/89‑1 (MQ=255) tCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAg > 1:761371/1‑89 (MQ=255) tCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAAccgc > 2:869281/1‑150 (MQ=255) ccGCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcccgtgcacaggcctgcagcgaccgg < 2:843181‑M2/117‑92 (MQ=255) ccGCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcccgtgcacaggcctgcagcgaccgg > 1:843181‑M2/1‑26 (MQ=255) ccGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCa > 2:1525016/1‑150 (MQ=255) gCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctg < 2:1386263‑M2/150‑127 (MQ=255) gCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaa > 2:551117‑M2/1‑24 (MQ=255) gCTCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaa < 1:551117‑M2/76‑53 (MQ=255) tCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctgta < 1:460124‑M2/150‑129 (MQ=255) tCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcct < 1:280000‑M2/147‑126 (MQ=255) tCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcct > 2:280000‑M2/1‑22 (MQ=255) tCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatc > 1:1654292‑M2/1‑22 (MQ=255) tCCCACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatc < 2:1654292‑M2/145‑124 (MQ=255) tCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCg > 1:107735/1‑150 (MQ=255) tgacagggac‑agggCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCGCAGGCGATCAAAGACGCGGCAGCATGTAAACATACGGCAAAACCATTCCAGCCACCGCGCCTCCCAGGAACGCACTCAAACGCGGCCACCGcc > 2:747731/3‑149 (MQ=25) ccACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctgtacc < 1:1284250‑M2/150‑131 (MQ=255) ccACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctgtacc < 1:1487319‑M2/150‑131 (MQ=255) ccACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctgtacc < 2:1669667‑M2/150‑131 (MQ=255) ccACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacag > 1:1713509‑M2/1‑20 (MQ=255) ccACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacag < 2:1713509‑M2/96‑77 (MQ=255) ccACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcct < 2:631028‑M2/88‑69 (MQ=255) ccACAGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcct > 1:631028‑M2/1‑20 (MQ=255) ccACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 1:1796452/1‑150 (MQ=255) ccACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 2:1308122/1‑150 (MQ=255) ccACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 1:1634703/1‑150 (MQ=255) caacaGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGCAAAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTACCGCCACCCCGCCTTCCAGGAACGCACTCAACCGCCGCACCCCCt > 2:293618/3‑150 (MQ=255) cacaGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctgtacct < 1:916597‑M2/150‑132 (MQ=255) acaGGTAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaaaaggccggtacagatttacatcgaacccacgttccacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccaccccatcctgtacctg < 2:61646‑M2/150‑133 (MQ=255) acaGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg < 1:275024/58‑1 (MQ=255) acaGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg > 2:275024/1‑58 (MQ=255) acaGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTg > 2:295/1‑103 (MQ=255) acaGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTg < 1:295/103‑1 (MQ=255) acaGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcg > 1:1856929/1‑150 (MQ=255) acaGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcg > 1:1402596/1‑150 (MQ=255) acaGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACCCAACCGCCGCAACCGCTcg > 2:778088/1‑150 (MQ=255) tAC‑AGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctgtacctgcaacc > 2:1487319‑M2/1‑13 (MQ=255) c‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTc > 2:10440/1‑150 (MQ=255) aTACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCggg > 1:616832/1‑150 (MQ=255) | TGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTAC‑AGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGG > NC_002947/6006497‑6006787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |