New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 380858	33 (0.590)	17 (0.370)	14/220	2.8	34.6%	intergenic (+45/+64)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 380892	37 (0.800)					intergenic (+79/+30)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer

CTCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/380691‑380858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgggcacgcccgctcccacaAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTCGGCTTCGTCC  <  NC_002947/380892‑380744                                                                                                                                                                                                                                                                                                                               CTCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCG                                                                                                                                                                         >  1:456966/1‑150  TCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGG                                                                                                                                                                        <  2:557245/150‑1  TCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGG                                                                                                                                                                        >  2:101100/1‑150    AAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGC                                                                                                                                                                      >  2:1057560/1‑150      ACTTGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCAC                                                                                                                                                                    <  1:1168988/150‑1      ACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCAC                                                                                                                                                                    <  1:21567/150‑1        TGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGC                                                                                                                                                                  <  1:1057560/150‑1        TGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGC                                                                                                                                                                  <  1:794511/150‑1        TGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACAGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGCTGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGC                                                                                                                                                                  >  1:1332678/1‑150                  GGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCAC                                                                                                                                                        >  1:474609/1‑150                   GTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACA                                                                                                                                                       >  1:1033151/1‑150                       AAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGC                                                                                                                                                                          <  2:991031/127‑1                       AAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGC                                                                                                                                                                          >  1:991031/1‑127                                                           AAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCA                                                                                                                                           <  2:149123/122‑1                                                           AAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCA                                                                                                                                           >  1:149123/1‑122                                                                     CTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGG‑TCATCGCAGTCCTGAAGATA                                                                                                                               >  1:859565/1‑123                                                                     CTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCAC‑AGGGTCATCGCAGTCCTGAAGATA                                                                                                                               <  2:859565/123‑1                                                                                CGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGGTGGAGCGGGCGTGCCCGCGAAGAA                                                                                          <  1:887644/150‑1                                                                                      GCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                             >  1:49908/1‑141                                                                                      GCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                             <  2:49908/141‑1                                                                                                GAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTG                                                                                                                 <  2:675757/111‑1                                                                                                GAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTG                                                                                                                 >  1:675757/1‑111                                                                                                GAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGAC                                                                                                                       <  2:654617/105‑1                                                                                                GAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGAC                                                                                                                       >  1:654617/1‑105                                                                                                                         TGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCAC‑AGGTTCACCGCAGTCCTGAAGATAGCGATGACCCT                                                                                                                    <  1:752415/82‑1                                                                                                                         TGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCAC‑AGGTTCACCGCAGTCCTGAAGATAGCGATGACCCT                                                                                                                    >  2:752415/1‑82                                                                                                                                   GCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGT                                                                                                                  >  1:879118/1‑75                                                                                                                                   GCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGT                                                                                                                  <  2:879118/75‑1                                                                                                                                      AGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACC                                                                                                                      >  1:702073/1‑68                                                                                                                                      AGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACC                                                                                                                      <  2:702073/68‑1                                                                                                                                                  TCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAG                        >  2:93540/1‑150                                                                                                                                                    GCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGTGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAAT                                                                <  2:494254/108‑1                                                                                                                                                    GCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGTGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAAT                                                                >  1:494254/1‑108                                                                                                                                                    GCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGA                      >  2:719156/1‑150                                                                                                                                                        GCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGAAAGGATGTA                  <  2:368404/150‑1                                                                                                                                                            GCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGTGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCC              >  2:807245/1‑150                                                                                                                                                                    CCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCACGCCCGCtcc                                                                                             >  2:500096/1‑60                                                                                                                                                                    CCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCACGCCCGCtcc                                                                                             <  1:500096/63‑4                                                                                                                                                                     CACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTCGGCTTCG     >  2:1332678/1‑150                                                                                                                                                                     CACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTCGGCTTCG     >  2:847174/1‑150                                                                                                                                                                        AAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTCGGCTTCGTCC  >  2:456966/1‑150                                                                                                                                                                                                                                                                                                                               CTCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/380691‑380858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgggcacgcccgctcccacaAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTCGGCTTCGTCC  <  NC_002947/380892‑380744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.