| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 380858 | 33 (0.590) | 17 (0.370) | 14/220 | 2.8 | 34.6% | intergenic (+45/+64) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 380892 | 37 (0.800) | intergenic (+79/+30) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
GGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGT > NC_002947/380744‑381040 | ggACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTt > 2:456966‑M2/1‑149 (MQ=255) cGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtg > 2:847174‑M2/1‑146 (MQ=255) cGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtg > 2:1332678‑M2/1‑146 (MQ=255) gggCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCACTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggc > 2:807245‑M2/1‑137 (MQ=255) tACATCCTTTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgc < 2:368404‑M2/150‑18 (MQ=255) tCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgc > 2:719156‑M2/1‑129 (MQ=255) cTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcga > 2:93540‑M2/1‑127 (MQ=255) gctgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCAACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTc < 1:471654/150‑1 (MQ=255) gtgCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGTAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAg > 1:18298/1‑150 (MQ=255) gATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCAt > 2:977237/1‑150 (MQ=255) gATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGATATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAg < 1:101100/150‑1 (MQ=255) aTTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAgg < 1:368404/150‑1 (MQ=255) aTTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCACTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgc < 2:494254‑M2/108‑22 (MQ=255) aTTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCACTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgc > 1:494254‑M2/1‑87 (MQ=255) tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGc < 1:1296079/137‑1 (MQ=255) tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGc > 2:1296079/1‑137 (MQ=255) tCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAAc < 1:339233/121‑1 (MQ=255) tCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAAc > 2:339233/1‑121 (MQ=255) aGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCa < 1:298606/149‑1 (MQ=255) aGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCa > 2:298606/1‑149 (MQ=255) ttcttcGCGGGCACGCCCGCTCCACCAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacg < 1:887644‑M2/150‑90 (MQ=255) ttcGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgc < 2:49908‑M2/141‑84 (MQ=255) ttcGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgc > 1:49908‑M2/1‑58 (MQ=255) ggagcgggcGTGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgg > 2:500096‑M2/4‑58 (MQ=255) ggagcgggcGTGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgg < 1:500096‑M2/60‑6 (MQ=255) cgGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTcgcc > 1:1089900/1‑150 (MQ=255) ccGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTc > 1:654610/1‑150 (MQ=255) ccACAGGGTCATCGCTATCTTCAGGACTGCGGTGCACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgc > 1:343988/1‑150 (MQ=255) ccACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCTCTGGTCTGATgg > 1:638043/1‑149 (MQ=255) ccACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgc > 2:1159262/1‑150 (MQ=255) ccACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgc > 1:513953/1‑150 (MQ=255) ccACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgc > 2:1129663/1‑150 (MQ=255) cacaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttc > 1:675757‑M2/1‑38 (MQ=255) cacaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttc < 2:675757‑M2/111‑74 (MQ=255) acaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggc < 2:879118‑M2/75‑39 (MQ=255) acaGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggc > 1:879118‑M2/1‑37 (MQ=255) aGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTgtgggagcgggcgtgcccgcgaagaagccagactggccactggatca > 2:752415‑M2/1‑35 (MQ=255) aGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTgtgggagcgggcgtgcccgcgaagaagccagactggccactggatca < 1:752415‑M2/82‑48 (MQ=255) ggTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagact < 2:702073‑M2/68‑36 (MQ=255) ggTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagact > 1:702073‑M2/1‑33 (MQ=255) gTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttc > 1:654617‑M2/1‑32 (MQ=255) gTCATCGCTATCTTCAGGACTGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttc < 2:654617‑M2/105‑74 (MQ=255) tCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGa < 2:469420/108‑1 (MQ=255) tCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGa > 1:469420/1‑108 (MQ=255) cGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCAc < 1:894723/118‑1 (MQ=255) cGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCAc > 2:894723/1‑118 (MQ=255) cGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCa > 1:1119553/1‑150 (MQ=255) tATCTTCAGGACTGCGATGACCCTgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtag < 2:859565‑M2/123‑100 (MQ=255) tATCTTCAGGACTGCGATGA‑CCCtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtag > 1:859565‑M2/1‑23 (MQ=255) ttCAGGACTGCGGTGGACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGgcg > 2:1281343/1‑97 (MQ=255) ttCAGGACTGCGGTGGACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGgcg < 1:1281343/97‑1 (MQ=255) ttCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCa > 2:222774/1‑150 (MQ=255) gACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGAc < 2:1119553/150‑1 (MQ=255) tGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggctt < 2:149123‑M2/122‑111 (MQ=255) tGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggctt > 1:149123‑M2/1‑12 (MQ=255) tGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTc > 2:27973/1‑42 (MQ=255) tGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTc < 1:27973/42‑1 (MQ=255) gTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCgg < 2:252037/96‑1 (MQ=255) gTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCgg > 1:252037/1‑96 (MQ=255) tGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGtt < 1:977237/150‑1 (MQ=255) aCCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGACGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGAt < 1:1129663/150‑1 (MQ=255) cTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCa > 1:316778/1‑125 (MQ=255) cTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCa < 2:316778/125‑1 (MQ=255) cTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGt > 1:40197/1‑150 (MQ=255) cTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGAAGTTATTTTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGt > 1:783679/1‑150 (MQ=255) | GGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGACTGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCAGGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGCCCCGGTAGCACTCTGCACCGACAGGTCGTTGATGT > NC_002947/380744‑381040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |