| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 744924 = | NA (NA) | 60 (1.070) | 44/266 | 0.4 | 93.8% | intergenic (‑586/+45) | PP_0636/PP_0637 | cold shock DNA‑binding domain‑containing protein/transposase |
| ? | NC_002947 | = 2218171 | 4 (0.070) | coding (47/828 nt) | PP_1958 | hypothetical protein | |||||
TTATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCACGTA > NC_002947/744786‑745071 | ttATGATATTGAATTGACAATGCCACTTAGAATTTACAGTCTGTAAGCAAGTCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCa > 1:1080329/1‑150 (MQ=255) ttgaattgaCAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAAcccc > 2:45051/1‑150 (MQ=255) aattgaCAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCAcc > 2:1330427/1‑150 (MQ=255) tGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAg < 2:694457/150‑1 (MQ=255) gCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAg < 1:908791/149‑1 (MQ=255) gCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAg > 2:908791/1‑149 (MQ=255) cTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCAc < 1:342192/135‑1 (MQ=255) cTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCAc > 2:342192/1‑135 (MQ=255) cTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGa > 2:776250/1‑150 (MQ=255) ttAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGaa < 2:1311847/150‑1 (MQ=255) caGAATGTAAATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGCTGCACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAg > 2:1039161/2‑150 (MQ=255) ttCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTAcc > 1:1268193/1‑150 (MQ=255) cTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGt < 1:1205224/150‑1 (MQ=255) ggAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTgg > 1:238478/1‑150 (MQ=255) gAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGc < 2:895358/150‑1 (MQ=255) gcaATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGaa > 1:200851/1‑150 (MQ=255) attgatCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCAt > 1:233374/1‑150 (MQ=255) attgatCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCAt > 1:357644/1‑150 (MQ=255) atCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTg < 2:87051/132‑1 (MQ=255) atCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGgca > 2:959322/1‑150 (MQ=255) atCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATACATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTg > 1:87051/1‑132 (MQ=255) tCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACACCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAA‑CTCTGGCCAACAGCTCCATGgcag > 2:223244/1‑150 (MQ=255) aGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGgcagca > 2:1352866/1‑150 (MQ=255) gATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAACTAACATGGCTTATAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CACTTGCGAACAGTTCCATAgcagcac > 2:637006/1‑149 (MQ=25) aTGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCagcagc < 2:1080329/150‑1 (MQ=255) aCAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCtt > 1:672701/1‑150 (MQ=255) cAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACCGTTCCATGGCAGCAGCGCTTc < 1:1039161/150‑1 (MQ=255) cAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTc < 1:776250/150‑1 (MQ=255) cAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTc < 1:45051/150‑1 (MQ=255) aGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCg < 1:1330427/150‑1 (MQ=255) cTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCTAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAg > 2:921800/1‑150 (MQ=255) cTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAg > 2:43104/1‑150 (MQ=255) tCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTc > 1:898721/1‑145 (MQ=255) tCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTc < 2:898721/145‑1 (MQ=255) tCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGt > 2:1122498/1‑150 (MQ=255) ccAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTc > 2:525536/1‑150 (MQ=255) cAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCt > 1:146620/1‑150 (MQ=255) aaTCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGc < 1:525536/150‑1 (MQ=255) aaTCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGc < 2:200851/150‑1 (MQ=255) tCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTa < 2:233374/150‑1 (MQ=255) atGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATTGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGAt < 1:303781/150‑1 (MQ=255) gAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGc > 1:619979/1‑150 (MQ=255) aTTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTg < 1:762917/150‑1 (MQ=255) tttAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGc > 1:272443/1‑150 (MQ=255) ttAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCg < 2:1268193/150‑1 (MQ=255) ttAAGGAAGCTGGCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACACCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCg < 1:223244/150‑1 (MQ=255) aGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCa < 1:1058720/150‑1 (MQ=255) ggAAGCTGTCGCATCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCATGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAg > 2:217644/1‑150 (MQ=255) gAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGt > 2:64182/1‑150 (MQ=255) tCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTg < 1:349954/136‑1 (MQ=255) tCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTg > 2:349954/1‑136 (MQ=255) tCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCa < 2:619979/150‑1 (MQ=255) tCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGAATGCTTTTG‑GAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCa > 1:725341/1‑150 (MQ=14) gCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAgg > 1:992946/1‑150 (MQ=255) aGCTAACATGGCCTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGAc > 2:824204/1‑150 (MQ=255) cTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGt > 2:1324834/1‑150 (MQ=255) aCATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAg > 1:522997/1‑142 (MQ=40) aCATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAg < 2:522997/142‑1 (MQ=40) tGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCa > 1:257205/1‑150 (MQ=38) aaGTAACGGATCCATGACCCCCACCTCCCAGAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCTGCGCCACGtc < 2:238478/150‑2 (MQ=11) | TTATGATATTGAATTGACAATGCCACTTAGAATTTACATTCTGGAAGCAAGGCAGGCAATGCTGATTGATCAGATGAACAGCCTCCAAATCGATATGGCGAAATTTAAGGAAGCTGTCGCAGCTAACATGGCTTAGAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCAT‑CTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCGCTCCAGGACGTGGCGCAGCCACGTA > NC_002947/744786‑745071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |