New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2102836	68 (1.210)	8 (0.210) +AATAAAGATCTACAGGTTTCAGTCGAAGTCTGTAAGTCGTT	8/184	3.6	16.9%	noncoding (76/76 nt)	PP_t21	tRNA‑Gly
	?	NC_002947	4632531 =	46 (0.820)					intergenic (+90/+69)	PP_4096/PP_t59	hypothetical protein/tRNA‑Gly
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGAGCGCACCCGAGATCTTTGAAATACCCGTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGT  >  NC_002947/4632382‑4632677                                                                                                                                                      |                                                                                                                                                    ttGAGCGCACCCGAGATCTTTGAAATACCCGTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTcgaacg                                                                                                                                                     >  1:261388/1‑150 (MQ=255)         aCCCGAGATCTTTGAAATACCCGTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAgg                                                                                                                                             >  2:1115953/1‑150 (MQ=255)            cGAGATCTTTGAAATACCCGTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGccc                                                                                                                                          <  1:44760/150‑1 (MQ=255)                    ttGAAATACCCGTTGATGTAAGAAGCGATATGTCTAGGTAGCCCACGGCGTCACGGGCTGGGTGCGGCGTTGTTGGGTTTGTACTTCAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATTCATTCGAACGAAAAAAGGCCCTGAAGGGc                                                                                                                                  <  2:261388/150‑1 (MQ=255)                          tACCCGTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑ttttt                                                                                                                           <  1:1198501/150‑1 (MQ=255)                          tACCCGTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGATGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCGCGCAGGGCC‑ttttt                                                                                                                           >  1:1016882/1‑150 (MQ=255)                               gTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAgg                                                                                                                                    >  2:270249/1‑137 (MQ=255)                               gTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAgg                                                                                                                                    <  1:270249/137‑1 (MQ=255)                                      tGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTAc                                                                                                               <  1:11112/150‑1 (MQ=255)                                       gATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACa                                                                                                              <  1:1059109/150‑1 (MQ=255)                                               atatGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGa                                                                                                      <  1:1190747/150‑1 (MQ=255)                                                  tGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑tt                                                                                                                              >  1:2656/1‑123 (MQ=255)                                                  tGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑tt                                                                                                                              <  2:2656/123‑1 (MQ=255)                                                              ccACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGCCATCGACTGAAAGATATAGAt                                                                                       >  2:78796/1‑150 (MQ=255)                                                               cACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACt                                                                                                          >  2:1384214/1‑130 (MQ=255)                                                               cACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACt                                                                                                          <  1:1384214/130‑1 (MQ=255)                                                                aCGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCt                                                                                     >  2:577829/1‑150 (MQ=255)                                                                      tCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCt                                                                                     <  1:236646/144‑1 (MQ=255)                                                                      tCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCt                                                                                     >  2:236646/1‑144 (MQ=255)                                                                       cACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAAGCAGAATGCATTCGAACCAAAAAAGGCCCCGAAGGGCCTTTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTAttt                                                                               <  2:740572/150‑1 (MQ=255)                                                                        aCGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTgg                                                                             >  2:890890/1‑150 (MQ=255)                                                                             cAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCgg                                                                        <  1:577829/150‑1 (MQ=255)                                                                              aGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCggg                                                                       >  1:199998/1‑150 (MQ=255)                                                                                      gcgTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACgaga                                                               <  1:620643/150‑1 (MQ=255)                                                                                                    gTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCt                                                                                             <  1:1159493/106‑1 (MQ=255)                                                                                                    gTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCt                                                                                             >  2:1159493/1‑106 (MQ=255)                                                                                                        ttGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAgg                                                                                                                                    <  1:800684/64‑1 (MQ=255)                                                                                                        ttGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAgg                                                                                                                                    >  2:800684/1‑64 (MQ=255)                                                                                                        ttGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCaa                                                                                                                       <  2:953968/76‑1 (MQ=255)                                                                                                        ttGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCaa                                                                                                                       >  1:953968/1‑76 (MQ=255)                                                                                                        ttGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACga                                                                 <  1:901149/130‑1 (MQ=255)                                                                                                        ttGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACga                                                                 >  2:901149/1‑130 (MQ=255)                                                                                                        ttGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCg                                             >  2:914149/1‑150 (MQ=255)                                                                                                        ttGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTAGCGTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCg                                             >  1:1065009/1‑150 (MQ=255)                                                                                                                           gggTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTg                            >  2:1170055/1‑148 (MQ=255)                                                                                                                           gggTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTg                            <  1:1170055/148‑1 (MQ=255)                                                                                                                            ggTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGgtc                         <  2:1016882/150‑1 (MQ=255)                                                                                                                              tATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCg                                                                                                       >  2:353692/1‑70 (MQ=255)                                                                                                                              tATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCg                                                                                                       <  1:353692/70‑1 (MQ=255)                                                                                                                                  gAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCaa                   <  1:890890/150‑1 (MQ=255)                                                                                                                                  gAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCaa                   <  1:1115953/150‑1 (MQ=255)                                                                                                                                   aGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAAc                  <  2:199998/150‑1 (MQ=255)                                                                                                                                                   aacgaaAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGcgt  >  1:443181/1‑150 (MQ=255)                                                                                                                                                   aacgaaAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATATTTATTTGGAGCGGGAAACGAGACTCGAACTCGCCATCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGCGCTATTCCcgctt  >  2:217772/1‑148 (MQ=255)                                                                                                                                                    acgaaAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTg                                       >  1:483343/1‑112 (MQ=255)                                                                                                                                                    acgaaAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTg                                       <  2:483343/112‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    TTGAGCGCACCCGAGATCTTTGAAATACCCGTTGACGTGATCAGCGATATGTCCAGGTAGCCCACGGCGTCACGGCCAGGGCGCCGCGTTGTGGTGTTTGTACTTGAATTTCGTAGAGGGCGGGGTATTGAGGCAGAATGCATTCGAACGAAAAAAGGCCCCGAAGGGCC‑TTTTTTCAACGACTTACAGACTTCGACTGAAACCTGTAGATCTTTATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGT  >  NC_002947/4632382‑4632677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.