New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5382446 =	36 (0.950)	6 (0.210)	6/200	3.0	23.3%	intergenic (+18/+115)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	5382544 =	13 (0.470)					intergenic (+116/+17)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR

GAGGTGCTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5382629‑5382446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGACAA  >  NC_002947/5382544‑5382691                                                                                                                                                                                                                                                                                                                                              GAGGTGCTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATT                                                                                                                                                                                        >  2:494580/1‑150   GGTGCTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCC                                                                                                                                                                                      <  2:47010/150‑1       CTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTG                                                                                                                                                                                  <  2:300201/150‑1               GGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGG                                                                                                                                                                          <  2:779319/150‑1                 CGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCT                                                                                                                                                                        <  2:527651/150‑1                  GCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTT                                                                                                                                                                       <  2:828535/150‑1                  GCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTT                                                                                                                                                                       >  2:465128/1‑150                             CCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGA                                                                                                                                                            <  1:465128/150‑1                             CCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGA                                                                                                                                                            <  2:378629/150‑1                                                                                                                  CCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCA                                                                       >  1:358672/1‑150                                                                                                                   CACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAG                                                                      >  1:828376/1‑150                                                                                                                   CACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC                                                                                                                                                        <  2:879412/68‑1                                                                                                                   CACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC                                                                                                                                                        >  1:879412/1‑68                                                                                                                        GATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGC                                                                                                             <  2:511642/106‑1                                                                                                                        GATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGC                                                                                                             >  1:511642/1‑106                                                                                                                                    GCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACA                                                     <  2:828376/150‑1                                                                                                                                       TGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAA                                                  <  2:358672/150‑1                                                                                                                                                      TCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAAGCGGGCGGCTGGACA                                   >  2:915443/1‑150                                                                                                                                                       CCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCTTGCACATACAAAATGTGCCGGCTGGACAC                                  <  1:828535/150‑1                                                                                                                                                        CTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGC                                             >  2:350676/1‑138                                                                                                                                                        CTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGC                                             <  1:350676/138‑1                                                                                                                                                              GAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGC                           <  1:435433/150‑1                                                                                                                                                                         CCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATC                      <  2:249288/144‑1                                                                                                                                                                         CCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATC                      >  1:249288/1‑144                                                                                                                                                                           CGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTACTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCC              >  1:210492/1‑150                                                                                                                                                                                       GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGACAA  >  2:245114/1‑150                                                                                                                                                                                                                                                                                                                                              GAGGTGCTGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5382629‑5382446 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTCGACAA  >  NC_002947/5382544‑5382691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.