| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4647603 = | 23 (0.610) | 8 (0.300) | 7/192 | 2.5 | 41.8% | intergenic (+10/+121) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | 4647711 = | 6 (0.220) | intergenic (+118/+13) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
AATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG > NC_002947/4647461‑4647705 | gatgattcggccggtgcggcgctgaaaaccctgcgcgagcgctatgccaaggggggcaagcatttgggcgtggtgcatttgtcggagcggtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCg > 1:32254‑M1/143‑150 (MQ=255) gCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCggg > 1:742518/1‑150 (MQ=255) aTGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTGACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCGTCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGc < 2:674049/150‑1 (MQ=255) gcTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCt > 2:683088/1‑150 (MQ=255) ccctgcgcgagcgctatgccaaggcgggcaagcatttgcgcgtggtgcatttgtcggagcggtgcaagaagctgttgcagcgggcgggcgagcagacttgaaaactgttgcggtCGTTTCCGGCCTCTTCGCGGGTAAACCCGCTCCTAc > 1:534629‑M1/115‑150 (MQ=255) gACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAAcc > 1:12625/1‑136 (MQ=255) gACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAAcc < 2:12625/136‑1 (MQ=255) gccgggccAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAg > 1:849200/1‑150 (MQ=255) gccAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGTCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCa > 1:318667/1‑150 (MQ=255) caaggcgggcaagcatttgcgcgtggtgcatttgtcggtgcggtgcaagcagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTATTCGCGCGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCaa < 1:74474‑M1/55‑1 (MQ=255) ttCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACAtt < 1:683088/150‑1 (MQ=255) gcaagcatttgcgcgtggtgcatttgtcggagcggtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGc < 2:881492‑M1/30‑1 (MQ=255) gcaagcatttgcgcgtggtgcatttgtcggagcggtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGc > 1:881492‑M1/88‑117 (MQ=255) gcatttgcgcgtggtgcattggtcggagcggtgcaggaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGcc > 2:74474‑M1/84‑150 (MQ=255) tgcgcgtggtgcatttgtcggagcggtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCt > 2:5477‑M1/79‑150 (MQ=255) gcgcgtggtgcatttgtcggagcggtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTg > 2:837928‑M1/78‑150 (MQ=255) cccGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCt < 1:324609/76‑1 (MQ=255) cccGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCt > 2:324609/1‑76 (MQ=255) aTGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCgg < 2:849200/150‑1 (MQ=255) aTGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGCGGAGTAAGCTGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCgg < 2:321869/150‑1 (MQ=255) atttgtcggagcggtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTc > 1:34798‑M1/67‑82 (MQ=255) atttgtcggagcggtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTc < 2:34798‑M1/16‑1 (MQ=255) aggtcccGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTAc < 2:318667/146‑1 (MQ=255) ccGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCcgcg < 2:742518/150‑1 (MQ=255) ggCGAGCATTGACGAGGGCATCGTGAAGAAGAGCCGCGGGGAGTAAACGGTTCTCCTGTACCGGCCTCTTCGCGGGTAAACACGCTCCTACAGGATGGTCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGaa < 2:197465/150‑1 (MQ=39) gtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCgg < 1:580823‑M1/20‑1 (MQ=255) gtgcaagaagctgttgaagcgggcgggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCgg > 2:580823‑M1/54‑73 (MQ=255) gAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAagag > 1:510673/1‑150 (MQ=255) cATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCtgtg < 2:839011/54‑1 (MQ=255) cATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCtgtg > 1:839011/1‑54 (MQ=255) tggCCGATGGCATCCTCAAGATGAGCCGCGGGGAGTAAGCGGTTCTCTTGTGCCGGCATCTTCGAGGGTAAACCAGCGTGTACAGGATGGACTCAGGCCTAAACAATGTGTGCCCCCCTGTACGATCGGGTTTACCGGCGAAGAGGCCgg < 2:69137/148‑1 (MQ=255) aagaagAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAaga > 1:877984/1‑127 (MQ=255) aagaagAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAaga < 2:877984/127‑1 (MQ=255) gggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAg < 1:10757‑M1/76‑1 (MQ=255) gggcgagcagcattgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAg > 2:10757‑M1/30‑105 (MQ=255) gaagaGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCgg > 1:912435/1‑110 (MQ=255) gaagaGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCgg < 2:912435/110‑1 (MQ=255) ttgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAg < 1:332441‑M1/76‑1 (MQ=255) ttgaaaactgttgcggtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAg > 2:332441‑M1/18‑93 (MQ=255) | AATGTTCGGCTACGCCACCTCGATGCGCTCGATGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG > NC_002947/4647461‑4647705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |