New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4075786	NA (NA)	69 (1.060)	48/254	0.4	98.7%	intergenic (‑328/+113)	PP_3586/tpx	transposase/2‑Cys peroxiredoxin
	?	NC_002947	= 4957611	1 (0.010)					intergenic (‑49/+114)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein

TAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCGGC  >  NC_002947/4075653‑4075935                                                                                                                                      |                                                                                                                                                      tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTc                                                                                                                                       >  1:1397192/1‑150 (MQ=34) tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTc                                                                                                                                       >  2:33643/1‑150 (MQ=34)  aaCAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTca                                                                                                                                      <  1:224451/150‑1 (MQ=35)    cAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTcaca                                                                                                                                    >  1:404198/1‑150 (MQ=37)           aaaGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCttt                                                                                                                              <  2:486170/149‑1 (MQ=255)           aaaGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCttt                                                                                                                              >  1:486170/1‑149 (MQ=255)                 ggcTGGCCCTACCGGGCCCACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACt                                                                                                                       >  2:19025/1‑150 (MQ=255)                    tGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACATCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACtgtg                                                                                                                    <  2:316348/150‑1 (MQ=255)                    tGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACtgtg                                                                                                                    >  1:860155/1‑150 (MQ=255)                        ccTACCGGGCCAACCGCCTTTTCTTTTTCCAAATGTCAGCGTCGCTGCGGAACTGCAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGc                                                                                                                >  1:1315188/1‑150 (MQ=255)                        ccTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGc                                                                                                                >  2:1334886/1‑150 (MQ=255)                            ccGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGc                                                                                                                >  2:881650/1‑146 (MQ=255)                            ccGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGc                                                                                                                <  1:881650/146‑1 (MQ=255)                            ccGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGt                                                                                                            >  2:396023/1‑150 (MQ=255)                                  cAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAgg                                                                                                      <  2:404198/150‑1 (MQ=255)                                  cAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAgg                                                                                                      >  2:906603/1‑150 (MQ=255)                                   aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGtt                                                                                                           >  2:249509/1‑144 (MQ=255)                                   aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGtt                                                                                                           <  1:249509/144‑1 (MQ=255)                                    aCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCa                                                                                                               >  1:1095454/1‑139 (MQ=255)                                    aCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCa                                                                                                               <  2:1095454/139‑1 (MQ=255)                                     ccGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCttt                                                                                                                              <  1:699925/123‑1 (MQ=255)                                     ccGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCttt                                                                                                                              >  2:699925/1‑123 (MQ=255)                                        ccTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCggg                                                                                                <  1:464640/150‑1 (MQ=255)                                        ccTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCcgg                                                                                                <  1:1702015/150‑1 (MQ=255)                                         cttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTca                                                                                                                                      >  1:185353/1‑111 (MQ=37)                                         cttgtcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTca                                                                                                                                      <  2:185353/111‑1 (MQ=37)                                               tttttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTAccc                                                                                         >  2:1342108/1‑150 (MQ=255)                                                 tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCcgc                                                                                       <  1:1432578/150‑1 (MQ=255)                                                 tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCcgc                                                                                       <  2:1142273/150‑1 (MQ=255)                                                    cAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGaa                                                                                    >  1:1100102/1‑150 (MQ=255)                                                      acaTGTCCGCCGCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                  <  2:894319/148‑1 (MQ=255)                                                        aTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAgg                                                                                <  2:1056181/150‑1 (MQ=255)                                                          gTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGcc                                                                              <  1:1422725/150‑1 (MQ=255)                                                           tCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTTCTGCGCGACCGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGCGGTAGGAGCGGGTTTACCCGCGAAGACGCCa                                                                             >  2:275527/1‑150 (MQ=21)                                                            cAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAg                                                                            >  1:1284857/1‑150 (MQ=255)                                                                gTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGcaca                                                                        <  1:1494726/150‑1 (MQ=255)                                                                   gCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGGCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCTGGTTTACCCGCGAAGAGGCCAGCACAGGc                                                                     <  1:1493130/150‑1 (MQ=255)                                                                      gCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTAc                                                                  >  1:285969/1‑150 (MQ=255)                                                                             tGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgcc                                                           >  2:181703/1‑150 (MQ=255)                                                                               aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGaa                                                                                    <  2:971716/123‑1 (MQ=255)                                                                               aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGaa                                                                                    >  1:971716/1‑123 (MQ=255)                                                                                aGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGAcgcccgc                                                        <  2:113118/150‑1 (MQ=255)                                                                                    gTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGt                                                                                               <  2:669207/107‑1 (MQ=255)                                                                                    gTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGt                                                                                               >  1:669207/1‑107 (MQ=255)                                                                                     tACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGc                                                   <  1:906603/150‑1 (MQ=255)                                                                                          cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCAc                                              >  2:928033/1‑150 (MQ=255)                                                                                               gTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAAt                                         <  2:1315188/150‑1 (MQ=255)                                                                                                tttGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTg                                                                                                          >  1:1168269/1‑84 (MQ=255)                                                                                                tttGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTg                                                                                                          <  2:1168269/84‑1 (MQ=255)                                                                                                tttGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATc                                        >  2:487817/1‑150 (MQ=255)                                                                                                     tgcGCGACAGCGCAGACCGGAAGGGCTGGGGGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTAc                                   >  2:705478/1‑150 (MQ=255)                                                                                                     tgcACGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTAc                                   >  2:711218/1‑150 (MQ=255)                                                                                                         cgACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCa                               <  2:1284857/150‑1 (MQ=255)                                                                                                         cgACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCa                               <  1:33643/150‑1 (MQ=255)                                                                                                          gACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAg                              >  2:375845/1‑150 (MQ=255)                                                                                                          gACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAg                              <  1:396023/150‑1 (MQ=255)                                                                                                              gcgcAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTAca                          <  1:19025/150‑1 (MQ=255)                                                                                                                     ccGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACACCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAgcg                   >  1:565601/1‑150 (MQ=255)                                                                                                                       ggAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                 >  1:1195259/1‑70 (MQ=255)                                                                                                                       ggAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCgg                                                                                                 <  2:1195259/70‑1 (MQ=255)                                                                                                                         aaGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGcgccgc               <  1:1334886/150‑1 (MQ=255)                                                                                                                          aGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCgccgcc              <  1:181703/150‑1 (MQ=255)                                                                                                                           gggCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCt             <  1:1363840/150‑1 (MQ=255)                                                                                                                            ggCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTc            <  2:659303/150‑1 (MQ=255)                                                                                                                            ggCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTc            <  1:928033/150‑1 (MQ=255)                                                                                                                               tGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGTGGCCAGGATGATCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTa         <  2:44976/150‑1 (MQ=255)                                                                                                                               tGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTa         <  1:552006/150‑1 (MQ=255)                                                                                                                               tGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTa         <  1:711218/150‑1 (MQ=255)                                                                                                                                 ggTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                             <  1:770308/80‑1 (MQ=255)                                                                                                                                 ggTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                             >  2:770308/1‑80 (MQ=255)                                                                                                                                     aTCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCgg   >  1:694596/1‑150 (MQ=255)                                                                                                                                     aTCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGATTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCgg   <  1:705478/150‑1 (MQ=255)                                                                                                                                      tctcCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCGGc  <  1:935940/150‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                      TAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACGGGGATGTCACAGCCTTTGAAAACTGTGCCGCACGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCTACAGACGCCCGCCCTGCCCCACGCAATCCTTACTTCAGTACAGCCAGCGCCGCCTCGTAGTTCGGC  >  NC_002947/4075653‑4075935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.