mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 56 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,741,280 | 0 | C | T | 74.3% | 55.3 / 16.7 | 35 | intergenic (+471/+281) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,277 | 0 | C | T | 68.6% | 37.9 / 24.4 | 35 | intergenic (+468/+284) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,273 | 1 | . | C | 60.0% | 67.7 / 47.7 | 35 | intergenic (+464/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,275 | 0 | A | G | 60.0% | 18.0 / 31.1 | 35 | intergenic (+466/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 699,725 | 0 | A | G | 58.6% | 32.0 / 76.9 | 70 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 4,741,299 | 0 | C | T | 57.5% | 4.3 / 44.7 | 41 | intergenic (+490/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,301 | 0 | A | C | 56.1% | 2.4 / 48.8 | 41 | intergenic (+492/+260) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,304 | 0 | C | G | 56.1% | ‑2.5 / 58.4 | 41 | intergenic (+495/+257) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,305 | 0 | A | C | 55.0% | 66.6 / 71.5 | 41 | intergenic (+496/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 1,327,127 | 0 | C | T | 51.5% | 37.5 / 178.2 | 136 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,348,749 | 0 | A | G | 47.5% | 13.7 / 108.4 | 81 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 4,741,298 | 1 | . | T | 43.9% | 60.2 / 84.6 | 41 | intergenic (+489/+263) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,302 | 0 | A | G | 43.9% | 6.7 / 47.3 | 41 | intergenic (+493/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 195,634 | 0 | C | T | 41.3% | 77.1 / 136.6 | 121 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,988,893 | 0 | C | G | 40.7% | 199.2 / 144.2 | 113 | intergenic (+131/‑415) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,875 | 0 | T | C | 40.7% | 173.5 / 129.0 | 118 | intergenic (+113/‑433) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,900 | 0 | C | G | 40.5% | 198.8 / 148.8 | 111 | intergenic (+138/‑408) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,945 | 0 | C | A | 40.4% | 166.9 / 90.8 | 94 | intergenic (+183/‑363) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,906 | 0 | C | T | 40.2% | 172.7 / 122.9 | 112 | intergenic (+144/‑402) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 4,741,274 | 0 | A | C | 40.0% | 19.0 / 32.7 | 35 | intergenic (+465/+287) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| Marginal new junction evidence (lowest skew 10 of 892 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1013230 | 71 (1.040) | 19 (0.360) | 15/208 | 3.3 | 25.7% | intergenic (+55/+76) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein |
| ? | NC_002947 | = 1013258 | 55 (1.040) | intergenic (+83/+48) | prfC/potF‑I | peptide chain release factor 3/putrescine‑binding protein | |||||
| * | ? | NC_002947 | = 4586100 | 58 (0.850) | 15 (0.310) | 13/192 | 3.4 | 29.9% | intergenic (+139/+78) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | = 4586128 | 29 (0.590) | intergenic (+167/+50) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase | |||||
| * | ? | NC_002947 | = 6006630 | 30 (0.440) | 23 (0.460) | 13/196 | 3.5 | 55.5% | intergenic (+42/+57) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | = 6006642 | 15 (0.300) | intergenic (+54/+45) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
| * | ? | NC_002947 | 5477138 = | 45 (0.660) | 15 (0.320) | 12/186 | 3.5 | 29.7% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5477237 = | 40 (0.840) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
| * | ? | NC_002947 | = 5653009 | 84 (1.230) | 19 (0.330) | 15/226 | 3.7 | 21.0% | intergenic (‑59/+102) | PP_4961/PP_4962 | lipoprotein/hypothetical protein |
| ? | NC_002947 | = 5653023 | 72 (1.250) | intergenic (‑73/+88) | PP_4961/PP_4962 | lipoprotein/hypothetical protein | |||||
| * | ? | NC_002947 | 5224575 = | 9 (0.130) | 25 (0.390) | 17/250 | 3.7 | 78.9% | intergenic (‑231/+148) | PP_4603/PP_4604 | transposase/DMT superfamily permease |
| ? | NC_002947 | = 5453177 | 5 (0.080) | intergenic (+142/‑213) | lnt/PP_4791 | apolipoprotein N‑acyltransferase/transposase | |||||
| * | ? | NC_002947 | 5224548 = | 1 (0.010) | 24 (0.380) | 17/250 | 3.7 | 82.9% | intergenic (‑204/+175) | PP_4603/PP_4604 | transposase/DMT superfamily permease |
| ? | NC_002947 | 5224584 = | 9 (0.140) | intergenic (‑240/+139) | PP_4603/PP_4604 | transposase/DMT superfamily permease | |||||
| * | ? | NC_002947 | = 4583538 | 65 (0.950) | 17 (0.290) | 15/228 | 3.7 | 24.8% | intergenic (‑67/+104) | treSB/glgE | bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase |
| ? | NC_002947 | = 4583599 | 48 (0.830) | intergenic (‑128/+43) | treSB/glgE | bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase | |||||
| * | ? | NC_002947 | 4075662 = | 4 (0.060) | 24 (0.380) | 17/250 | 3.7 | 79.0% | intergenic (‑204/+237) | PP_3586/tpx | transposase/2‑Cys peroxiredoxin |
| ? | NC_002947 | 5224584 = | 9 (0.140) | intergenic (‑240/+139) | PP_4603/PP_4604 | transposase/DMT superfamily permease | |||||
| * | ? | NC_002947 | 3828223 = | 7 (0.100) | 24 (0.380) | 17/250 | 3.7 | 75.6% | intergenic (‑204/+155) | PP_3381/PP_3382 | transposase/gluconate 2‑dehydrogenase cytochrome c subunit |
| ? | NC_002947 | 5224584 = | 9 (0.140) | intergenic (‑240/+139) | PP_4603/PP_4604 | transposase/DMT superfamily permease | |||||