New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	486032 =	17 (0.900)	3 (0.170)	3/232	NT	15.4%	coding (286/381 nt)	apaG	Co(2+)/Mg(2+) efflux protein
	?	NC_002947	486064 =	17 (0.960)					coding (254/381 nt)	apaG	Co(2+)/Mg(2+) efflux protein

AAGTTGCTGTCGCGCCACTGGCTGATCACCAACGGTGACGGCGAGGTAGAGGAAGTACGCGGCGCCGGCGTGGTCGGCCAGCAACCCAACATCGACCCTGGCCAGAGCCACACTTACAGCAGTGGTGCCGTCATCAGCACCCGCGTTGGCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/486185‑486032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccaCTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGC  >  NC_002947/486064‑486174                                                                                                                                                                                                                                                                           AAGTTGCTGTCGCGCCACTGGCTGATCACCAACGGTGACGGCGAGGTAGAGGAAGTACGCGGCGCCGGCGTGGTCGGCCAGCAACCCAACATCGACCCTGGCCAGAGCCACACTTACAGCAGTGGTGCCGTCATCAGCACCCGCGTTGGC                                                                                                                     >  1:91781/1‑150                                                                                                                    ACAGCAGTGGTGCCGTCATCAGCACCCGCGTTGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGC  >  1:241573/1‑150                                                                                                                       GCAGTGGTGCCGTCATCAGCACCCGCGTTGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGAC                                                               <  1:354114/86‑1                                                                                                                       GCAGTGGTGCCGTCATCAGCACCCGCGTTGGCACCACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGAC                                                               >  2:354114/1‑86                                                                                                                                                          ACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGC  <  1:268972/112‑1                                                                                                                                                          ACTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGC  >  2:268972/1‑112                                                                                                                                                                                                                                                                           AAGTTGCTGTCGCGCCACTGGCTGATCACCAACGGTGACGGCGAGGTAGAGGAAGTACGCGGCGCCGGCGTGGTCGGCCAGCAACCCAACATCGACCCTGGCCAGAGCCACACTTACAGCAGTGGTGCCGTCATCAGCACCCGCGTTGGCACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/486185‑486032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccaCTGCTGTAAGTGTGGCTCTGGCCAGGGTCGATGTTGGGTTGCTGGCCGACCACGCCGGCGCCGCGTACTTCCTCTACCTCGCCGTCACCGTTGGTGATCAGCCAGTGGCGC  >  NC_002947/486064‑486174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.