New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	490731 =	18 (0.960)	4 (0.210)	4/244	NT	19.6%	coding (1693/2823 nt)	lptD	LPS‑assembly protein LptD
	?	NC_002947	490755 =	15 (0.800)					coding (1669/2823 nt)	lptD	LPS‑assembly protein LptD

GCCCGACGGCATAGGTGGTCGGCGACTGGATGAAAACATCTTCGGTGTAGCGCGTGCCAACGGTACCCGCCTGAACGTCGCCCCTTCCATCAGCCTGCCGATGGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/490837‑490731 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGAT  >  NC_002947/490755‑490800                                                                                                                                                           GCCCGACGGCATAGGTGGTCGGCGACTGGATGAAAACATCTTCGGTGTAGCGCGTGCCAACGGTACCCGCCTGAACGTCGCCCCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCA                                    <  1:247673/119‑1 GCCCGACGGCATAGGTGGTCGGCGACTGGATGAAAACATCTTCGGTGTAGCGCGTGCCAACGGTACCCGCCTGAACGTCGCCCCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCA                                    >  2:247673/1‑119                                      ATCTTCGGTGTAGCGCGTGCCAACGGTACCCGCCTGAACGTCGCCCCCTCCATCGGCAGGCTGATGGAAGGGGCGAC                                         <  2:46506/77‑1                                                                             GTCGCCCCTTCCATCAGCCTGCCGATGGAGGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGAT  <  1:46506/77‑1                                                                                                                                                           GCCCGACGGCATAGGTGGTCGGCGACTGGATGAAAACATCTTCGGTGTAGCGCGTGCCAACGGTACCCGCCTGAACGTCGCCCCTTCCATCAGCCTGCCGATGGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/490837‑490731 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGAT  >  NC_002947/490755‑490800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.