| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 490731 = | 18 (0.960) | 4 (0.210) | 4/244 | NT | 19.6% | coding (1693/2823 nt) | lptD | LPS‑assembly protein LptD |
| ? | NC_002947 | 490755 = | 15 (0.800) | coding (1669/2823 nt) | lptD | LPS‑assembly protein LptD | |||||
TTGTAGTCGCCGAACACGTCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGCCGACCACCTATGCCGTCGGGCTTTAGTCCAGCAGTCAAATCTGGATTACCGTCTTCATCAAAG > NC_002947/490601‑490879 | ttGTAGTCGCCGAACACGTCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATg < 2:171448/150‑1 (MQ=255) gCCGAACACGTCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGc < 1:465902/150‑1 (MQ=255) cGAACACGTCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGc < 1:121166/121‑1 (MQ=255) cGAACACGTCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGc > 2:121166/1‑121 (MQ=255) acGTCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTc < 1:400680/150‑1 (MQ=255) tCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCTGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAgg > 1:354408/1‑150 (MQ=255) tCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGAt > 2:442071/1‑131 (MQ=255) tCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGAt < 1:442071/131‑1 (MQ=255) gtCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTAcc > 1:293033/1‑150 (MQ=255) tGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCTGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGtt < 2:354408/150‑1 (MQ=255) tGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGtt > 2:193835/1‑150 (MQ=255) cTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTa > 2:361388/1‑150 (MQ=255) tCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGc > 2:468915/1‑150 (MQ=255) aTGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGc > 1:361925/1‑48 (MQ=255) aTGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGc < 2:361925/48‑1 (MQ=255) aTGGGTAGACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGCCGACCACCTATGCCGTc > 1:378330/1‑150 (MQ=255) atcttcggtgtagcgcgtgccaacggtacccgcctgaacgtcgcccCCTCCATCGGCAGGCTGATGGAAGGGGCGAc < 1:46506‑M1/31‑1 (MQ=255) ggTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATc > 2:337289/1‑52 (MQ=255) ggTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATc < 1:337289/52‑1 (MQ=255) cATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGttt < 1:424683/112‑1 (MQ=255) cATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGttt > 2:424683/1‑112 (MQ=255) tgaacgtcgcccCTTCCATCAGCCTGCCGATGGAGGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGCCGACCACCTATGCCGTCGGGc > 2:247673‑M1/13‑119 (MQ=255) tgaacgtcgcccCTTCCATCAGCCTGCCGATGGAGGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGCCGACCACCTATGCCGTCGGGc < 1:247673‑M1/107‑1 (MQ=255) gCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGCCGACCACCTATGCCGTCGGGCTTTAGTCCAGCAGTCAAATCTGGATTACCGTc > 2:457381/1‑150 (MQ=255) cGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGCCGACCACCTATGCCGTCGGGCTTTAGTCCAGCAGTCAAATCTGGATTACCGTCtt < 1:457381/150‑1 (MQ=255) gtcgcccCTTCCATCAGCCTGCCGATGGAGGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGAt < 2:46506‑M1/70‑1 (MQ=255) gCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGCCGACCACCTATGCCGTCGGGCTTTAGTCCAGCAGTCAAATCTGGATTACCGTCTTCATCAAAg < 1:361388/150‑1 (MQ=255) | TTGTAGTCGCCGAACACGTCCAGTGTGTCTGCGTTCGCGCCTGCAATGTCGCCCTTGCCCTTGCTATCCAGGTCAAGGTCGTAATGGGTATACATGTACTTCAGCTTCGGCGTGATGTAGCCGTAGCTGGCCTCCATCGGCAGGCTGATGGAAGGGGCGACGTTCAGGCGGGTACCGTTGGCACGCGCTACACCGAAGATGTTTTCATCCAGTCGCCGACCACCTATGCCGTCGGGCTTTAGTCCAGCAGTCAAATCTGGATTACCGTCTTCATCAAAG > NC_002947/490601‑490879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |