| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 655800 = | 17 (0.900) | 9 (0.500) | 8/236 | NT | 36.5% | coding (546/1356 nt) | PP_0563 | two‑component system response regulator |
| ? | NC_002947 | 655828 = | 15 (0.830) | coding (518/1356 nt) | PP_0563 | two‑component system response regulator | |||||
CTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGCTGATCATCGACGATTCGCGCACACAGGCCATGTACAC‑CGAGCGTGTAC‑TGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/655910‑655800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCG > NC_002947/655828‑655973 CTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGCTGATCATCGACGATTCGCGCACACAGGCCA‑GTACACGCTCG‑GTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCA < 1:21042/136‑1CTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGCTGATCATCGACGATTCGCGCACACAGGCCA‑GTACAC‑GCTCGGTGTACATGGCCTGTGTGCGCGAATCGTCGATGATCA > 2:21042/1‑136 AGGCCATGTACAC‑CGAGCGTGTAC‑TGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTG < 1:169096/86‑1 AGGCCATGTACAC‑CGAGCGTGTAC‑TGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTG > 2:169096/1‑86 GCCATGTACAC‑CGAGCGTGTAC‑TGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCG > 1:94969/1‑150 GCCATGTACAC‑CGAGCGTGTAC‑TGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGA < 1:414949/147‑1 GCCATGTACAC‑CGAGCGTGTAC‑TGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGA > 2:414949/1‑147 CCATGTACAC‑CGAGCGTGTAC‑TGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGT < 1:272165/79‑1 CCATGTACAC‑CGAGCGTGTAC‑TGGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGT > 2:272165/1‑79 GGCCTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCG < 2:310873/150‑1 CTGCTGGAAAAGGTCGAACTGCTGACCAACACCGCCCCTCACGACCCGTTGCGCGTGCTGATCATCGACGATTCGCGCACACAGGCCATGTACAC‑CGAGCGTGTAC‑TGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/655910‑655800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccTGTGTGCGCGAATCGTCGATGATCAGCACGCGCAACGGGTCGTGAGGGGCGGTGTTGGTCAGCAGTTCGACCTTTTCCAGCAGGCTGGAAGCTTCCAGACTGCCGGTGAGAAAGTCCTGACCGCCGGCGCGCACTGCGGCAAGGCG > NC_002947/655828‑655973 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |