| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1419584 | 13 (0.690) | 7 (0.510) | 7/182 | NT | 39.3% | intergenic (‑67/+70) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419614 | 12 (0.870) | intergenic (‑97/+40) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1419407‑1419584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcacgcccgctcccacaggGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCA < NC_002947/1419614‑1419478 CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGCGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTGTGTTGTGTCGTTGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC > 1:413127/1‑150 TGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCTTTGGTTTCGGGGTTGCCTGGGCTGGCCT > 2:336342/1‑150 TGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCGGGGTTGCCTGGGCTGGCCT > 2:336346/1‑150 GGCAGGGGATGCCGGGTTCGAAGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTC > 1:477294/1‑150 CGGGTTCGATGCGGATCAGCGGGTGATTGTTGATTTCGCAGTGGGCGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGCCCTCTTCGCGGGCACG < 2:413127/150‑1 CGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCT > 1:162492/1‑150 GAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAG < 2:162492/150‑1 TGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCG > 1:418822/1‑150 GTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGA < 2:418822/150‑1 TCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGT > 1:10743/1‑145 TCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGT < 2:10743/145‑1 GACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGT < 2:477294/150‑1 TTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGtac > 1:447194/1‑85 TTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGtac < 2:447194/88‑4 TTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGG < 2:100828/87‑1 TTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGG > 1:100828/1‑87 GCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAA < 1:389814/87‑1 GCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAA > 2:389814/1‑87 gaGCGGGCGTGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCA > 1:336342/3‑150 ACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATG < 2:129138/117‑1 ACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATG > 1:129138/1‑117 CCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCCGGAAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCA > 1:413210/1‑150 CCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCA > 1:439025/1‑150 CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1419407‑1419584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcacgcccgctcccacaggGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCA < NC_002947/1419614‑1419478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |