| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1419584 | 13 (0.690) | 7 (0.510) | 7/182 | NT | 39.3% | intergenic (‑67/+70) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1419614 | 12 (0.870) | intergenic (‑97/+40) | PP_1242/PP_1244 | hypothetical protein/hypothetical protein | |||||
TGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGA > NC_002947/1419478‑1419751 | tGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTTCCGGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgg > 1:413210‑M2/1‑137 (MQ=255)tGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgg > 1:439025‑M2/1‑137 (MQ=255) tggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcacgcccgctc > 1:336342‑M2/1‑125 (MQ=255) cTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCCCGCCCGCTCCTCAAAGG‑ACTGTGCGGTGAGTGACGGTTCAGCGGACCCTGTGCGTTCCGCTGTTCCCGCGAAGCGGc < 2:401183/150‑1 (MQ=255) ggCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGGACTGTGCAGTGCGTGACGGCTGCCGCCCCCCTATGCGATCAGGCGTGCCCCCGAAGAGGCCGCACCCCCCAATGCaa > 1:387269/1‑150 (MQ=25) cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgt > 1:129138‑M2/1‑100 (MQ=255) cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgt < 2:129138‑M2/117‑18 (MQ=255) tGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCt > 2:99936/1‑115 (MQ=255) tGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCt < 1:99936/115‑1 (MQ=255) tGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGAAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGTAAGGTGTGAGGCTCTGTGGGTAAATGc > 1:125062/1‑150 (MQ=255) ttCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggc < 1:389814‑M2/87‑32 (MQ=255) ttCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggc > 2:389814‑M2/1‑56 (MQ=255) aCGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtc < 2:477294‑M2/150‑104 (MQ=255) aCGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATc > 1:97051/1‑129 (MQ=255) aCGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATc < 2:97051/129‑1 (MQ=255) gCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGc > 2:212591/1‑85 (MQ=255) gCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGc < 1:212591/85‑1 (MQ=255) cGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgt > 2:179802/1‑105 (MQ=255) cGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgt < 1:179802/105‑1 (MQ=255) tCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagac < 2:418822‑M2/150‑112 (MQ=255) c‑cACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaa < 2:100828‑M2/87‑51 (MQ=255) c‑cACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaa > 1:100828‑M2/1‑37 (MQ=255) acaGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaaga < 2:10743‑M2/145‑111 (MQ=255) acaGGTACTGTGCAGTGCGTGACGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaaga > 1:10743‑M2/1‑35 (MQ=255) cGGCTGTGGTGACcctgtgggagcgggcgtgcccgcgaagaggccagcccaggcaacccagaatccagggaaacaaaacaatgcccaccgacaacacaacagaacccaccacagtcggcaagacctgcttctaccaaggcgaaaacaaca > 1:418822‑M2/1‑13 (MQ=255) tggtgACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGa < 2:324751/114‑1 (MQ=255) tggtgACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGa > 1:324751/1‑114 (MQ=255) | TGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC‑CACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGA > NC_002947/1419478‑1419751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |