New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1900904 = | 20 (1.060) | 5 (0.270) | 5/240 | NT | 22.5% | coding (1413/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
? | NC_002947 | 1900952 = | 15 (0.820) | coding (1461/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
CCATGGCACACGCCACGCGGGCAATGATCTGCCAGTCCGGCAAGCTTTGCCCGGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1900962‑1900904 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCTATGCCGAATTGCGGACACAGCCGCGCCAGTGGCCT > NC_002947/1900952‑1901099 CCATGGCACACGCCAAGCGGGCAATGATCTGCCAGTCCGGCAAGCTTTGCCCGGGGGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGT > 2:33492/1‑150 ACACGCCACGCGGGCAATGATCTGCCAGTCCGGCAAGCTTTGCCCGGGGGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACC > 2:53230/1‑150 CCACGCGGGCAATGATCTGCCAGTCCGGCAAGCTTTGCCCGGGGGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGC < 1:53230/150‑1 AATGATCTGCCAGTCCGGCAAGCTTTGCCCGGGGGGCGTGTGCCATGGG < 1:361783/49‑1 AATGATCTGCCAGTCCGGCAAGCTTTGCCCGGGGGGCGTGTGCCATGGG > 2:361783/1‑49 GCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCTATGCCGAATTGCGGACACAGCCGCGCCAGTGGCCT > 2:202863/1‑150 CCATGGCACACGCCACGCGGGCAATGATCTGCCAGTCCGGCAAGCTTTGCCCGGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1900962‑1900904 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCTATGCCGAATTGCGGACACAGCCGCGCCAGTGGCCT > NC_002947/1900952‑1901099 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |