| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1900904 = | 20 (1.060) | 5 (0.270) | 5/240 | NT | 22.5% | coding (1413/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
| ? | NC_002947 | 1900952 = | 15 (0.820) | coding (1461/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase | |||||
TACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCTATGCCGAATTGCGGACACAGCCGCGCCAGTGGCCT > NC_002947/1900806‑1901099 | ggtcataaccggttgaggggttgtggaagcggcgtatttcctcatacaccgcttcggcattggggtagtcgaaggcgtcggcatagcccatggcacacGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCgtgt > 2:53230‑M1/99‑150 (MQ=255) gCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGtgtg > 1:152088/1‑148 (MQ=255) gCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGtgtg < 2:152088/148‑1 (MQ=255) accggttgaggggttgtggaagcggcgtatttcctcatacaccgcttcggcattggggtagtcgaaggcgtcggcatagcccatggcacacGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCTTGGCGTGTGCCATgg > 2:33492‑M1/92‑150 (MQ=255) ccGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCa > 1:352629/1‑150 (MQ=255) aGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAg < 2:352629/150‑1 (MQ=255) atgatCAACAGCGAGCGCAACCTGACCCTCATGCCACGCGCTGTCGAGCCCCCCGGTCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTAt > 1:140367/1‑150 (MQ=255) aaCAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGaa < 1:302867/150‑1 (MQ=255) tGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAAccccg < 2:140367/150‑2 (MQ=255) cACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGc < 2:16242/67‑1 (MQ=255) cACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGc > 1:16242/1‑67 (MQ=255) cgcgCTGTCGAGCGCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCAGGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGTGGAAATACGCCGCTTCCACATCCCCTCAACCGGt < 2:139251/150‑1 (MQ=255) ccatggcacacgccaagcgggcaatgatctgccagtccggcaagctttgcccggggggcGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGt > 2:33492‑M2/60‑150 (MQ=255) cTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATg < 1:508720/150‑1 (MQ=255) acacgccacgcgggcaatgatctgccagtccggcaagctttgcccggggggcGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGAcc > 2:53230‑M2/53‑150 (MQ=255) ccacgcgggcaatgatctgccagtccggcaagctttgcccggggggcGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTgcgc < 1:53230‑M2/103‑1 (MQ=255) ccccGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGAc < 1:319342/142‑1 (MQ=255) ccccGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGAc > 2:319342/1‑142 (MQ=255) cccGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGt > 1:159060/1‑150 (MQ=255) gggCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATc > 1:68384/1‑150 (MQ=255) aatgatctgccagtccggcaagctttgcccggggggcGTGTGCCATggg < 1:361783‑M2/12‑1 (MQ=255) aatgatctgccagtccggcaagctttgcccggggggcGTGTGCCATggg > 2:361783‑M2/38‑49 (MQ=255) aaaGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCt < 2:68384/150‑1 (MQ=255) ccGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCTATGCCGaa > 1:204706/1‑150 (MQ=255) cgtggcgtgTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCTATGCCGAATTGCGGACACAGCCGCGCCAGta < 2:159060/150‑2 (MQ=255) gcGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCTATGCCGAATTGCGGACACAGCCGCGCCAGTGGCCt > 2:202863‑M2/3‑150 (MQ=255) | TACGCCGACATCCTGCTGCCGGCCGCGCTGTGGGCCGAAGGCGAGGGTGTGATGATCAACAGCGAGCGCAACCTGACCCTGATGCCACGCGCTGTCGAGCCCCCCGGGCAAAGCTTGCCGGACTGGCAGATCATTGCCCGCGTGGCGTGTGCCATGGGCTATGCCGACGCCTTCGACTACCCCAATGCCGAAGCGGTGTATGAGGAAATACGCCGCTTCCACAACCCCTCAACCGGTTATGACCTGCGCGGTATCGGCTATGCCGAATTGCGGACACAGCCGCGCCAGTGGCCT > NC_002947/1900806‑1901099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |