New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2144373 =	21 (1.120)	4 (0.210)	5/244	NT	16.4%	coding (679/1005 nt)	lpxK	tetraacyldisaccharide 4'‑kinase
	?	NC_002947	2144394 =	20 (1.070)					coding (700/1005 nt)	lpxK	tetraacyldisaccharide 4'‑kinase

CCCCAGCAGGGTGTTGAAGAAACGTTGCGGGTTGCCGATACCGGCCACCGCATGCAGGCGCTGGCCGGCGGGGAAATGGTCGAGCGCACG‑GCGCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2144471‑2144373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCATTTCCCCGCCGGCCA  >  NC_002947/2144394‑2144410                                                                                                                       CCCCAGCAGGGTGTTGAAGAAACGTTGCGGGTTGCCGATACCGGCCACCGCATGCAGGCGCTGGCCGGCGGGGAAATGGGCGAGCGCCGT‑GCGCTCGACCATTTCCCCGCCGGCCA  <  1:265089/116‑1 CCCCAGCAGGGTGTTGAAGAAACGTTGCGGGTTGCCGATACCGGCCACCGCATGCAGGCGCTGGCCGGCGGGGAAATGGGCGAGCGCCGT‑GCGCTCGACCATTTCCCCGCCGGCCA  >  2:265089/1‑116 CCCCAGCAGGGTGTTGAAGAAACGTTGCGGGTTGCCGATACCGGCCACCGCATGCAGGCGCTGGCCGGCGGGGAAATGGGCGAGCGCCGT‑GCGCTCGACCATTTCCCCGCC       <  1:360595/111‑1 CCCCAGCAGGGTGTTGAAGAAACGTTGCGGGTTGCCGATACCGGCCACCGCATGCAGGCGCTGGCCGGCGGGGAAATGGGCGAGCGCCGT‑GCGCTCGACCATTTCCCCGCC       >  2:360595/1‑111   CCAGCAGGGTGTTGAAGAAACGTTGCGGGTTGCCGATACCGGCCACCGCATGCAGGCGCTGGCCGGCGGGGAAATGGGCGAGCGC‑CGTGCGCTCGACCAT                >  1:479897/1‑100   CCAGCAGGGTGTTGAAGAAACGTTGCGGGTTGCCGATACCGGCCACCGCATGCAGGCGCTGGCCGGCGGGGAAATGGGCGAGCGC‑CGTGCGCTCGACCAT                <  2:479897/100‑1                                                                                                                       CCCCAGCAGGGTGTTGAAGAAACGTTGCGGGTTGCCGATACCGGCCACCGCATGCAGGCGCTGGCCGGCGGGGAAATGGTCGAGCGCACG‑GCGCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2144471‑2144373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCATTTCCCCGCCGGCCA  >  NC_002947/2144394‑2144410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.