New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2144373 =	21 (1.120)	4 (0.210)	5/244	NT	16.4%	coding (679/1005 nt)	lpxK	tetraacyldisaccharide 4'‑kinase
	?	NC_002947	2144394 =	20 (1.070)					coding (700/1005 nt)	lpxK	tetraacyldisaccharide 4'‑kinase

GCGTGAGGCTGACGCGGTGCTGTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGTGCCGCATCCCTTCGCCGACCATGCGCAGTTCAGTGCC  >  NC_002947/2144273‑2144525                                                                                                                           |                                                                                                                                    gCGTGAGGCTGACGCGGTGCTGTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGc                                                                                                         <  2:150943/150‑1 (MQ=255)   gTGAGGCTGACGCGGTGCTGTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCgg                                                                                                       <  1:130553/150‑1 (MQ=255)    tGAGGCTGACGCGGTGCCGTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTCCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGATCGC‑CGTACGCTCGACCATTTCCCCGCCGGCCAGTCCCTGCATGCgtg                                                                                                      >  2:130553/1‑148 (MQ=255)              gcgGTGCTGTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGTGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATc                                                                                            >  2:41539/1‑150 (MQ=255)               gtgTGCTGTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCg                                                                                           <  1:381893/148‑1 (MQ=255)                      gTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTcccc                                                                                                                             >  1:141400/1‑109 (MQ=255)                      gTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTcccc                                                                                                                             <  2:141400/109‑1 (MQ=255)                      gTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAAccc                                                                                    >  2:398033/1‑150 (MQ=255)                       ttCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCACCGGCCACCGCATGCAGGCGCTGGCCggcgg                                                                                             >  1:239310/1‑137 (MQ=255)                       ttCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCACCGGCCACCGCATGCAGGCGCTGGCCggcgg                                                                                             <  2:239310/140‑4 (MQ=255)                        ccccagcagggtgttgaagaaacgttgcgggttgccgataccggccaccgcatgcaggcgctggccggcggggaaatgggcgagcgccgtgcgctcgacCATTTCCccgcc                                                                                                                          <  1:360595‑M2/12‑1 (MQ=255)                        ccccagcagggtgttgaagaaacgttgcgggttgccgataccggccaccgcatgcaggcgctggccggcggggaaatgggcgagcgccgtgcgctcgacCATTTCCccgcc                                                                                                                          >  2:360595‑M2/100‑111 (MQ=255)                        ccccagcagggtgttgaagaaacgttgcgggttgccgataccggccaccgcatgcaggcgctggccggcggggaaatgggcgagcgccgtgcgctcgacCATTTCCCCGCCGGCCa                                                                                                                     >  2:265089‑M2/100‑116 (MQ=255)                        ccccagcagggtgttgaagaaacgttgcgggttgccgataccggccaccgcatgcaggcgctggccggcggggaaatgggcgagcgccgtgcgctcgacCATTTCCCCGCCGGCCa                                                                                                                     <  1:265089‑M2/17‑1 (MQ=255)                          ccagcagggtgttgaagaaacgttgcgggttgccgataccggccaccgcatgcaggcgctggccggcggggaaatgggcgagcgccgtgcgctcgacCAt                                                                                                                                   <  2:479897‑M2/3‑1 (MQ=255)                          ccagcagggtgttgaagaaacgttgcgggttgccgataccggccaccgcatgcaggcgctggccggcggggaaatgggcgagcgccgtgcgctcgacCAt                                                                                                                                   >  1:479897‑M2/98‑100 (MQ=255)                                                            ttttcTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGc                                              <  2:334098/149‑1 (MQ=255)                                                                   cctgcAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGt                                       >  2:108851/1‑150 (MQ=255)                                                                            gTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGTGCCGCATcc                              <  1:397789/150‑1 (MQ=255)                                                                                 cccTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGTGCCGCATCCCTTCg                         >  1:94472/1‑150 (MQ=255)                                                                                  ccTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGAGCCGCATCCCTTCGc                        >  2:117512/1‑150 (MQ=255)                                                                                    tggccggcggggaaatgGTCGAGCGC‑ACGGCGCTCGCCCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTgggg                                                        <  1:265089‑M1/99‑1 (MQ=255)                                                                                    tggccggcggggaaatgGTCGAGCGC‑ACGGCGCTCGCCCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTgggg                                                        >  2:265089‑M1/18‑116 (MQ=255)                                                                                         ggcggggaaatgGTCGAGCGC‑ACGGCGCTCGCCCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTgggg                                                        <  1:360595‑M1/99‑1 (MQ=255)                                                                                         ggcggggaaatgGTCGAGCGC‑ACGGCGCTCGCCCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTgggg                                                        >  2:360595‑M1/13‑111 (MQ=255)                                                                                           cGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGTGCCGCATCCCTTCGCCGACCATgc               <  1:117512/150‑1 (MQ=255)                                                                                           cGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCAGGTGCCGCATCCCTTCGCCGACCATgc               <  1:68577/150‑1 (MQ=255)                                                                                              gcgcACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGTGCCGCATCCCTTCGCCGACCATGCGCa            <  1:398033/150‑1 (MQ=255)                                                                                                  atgGTCGAGCGCACG‑GCGCTCGCCCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTgg                                                          >  1:479897‑M1/4‑100 (MQ=255)                                                                                                  atgGTCGAGCGCACG‑GCGCTCGCCCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTgg                                                          <  2:479897‑M1/97‑1 (MQ=255)                                                                                                   cTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGTGCCGCATCCCTTCGCCGACCATGCGCAGTTCa       <  2:73725/150‑1 (MQ=255)                                                                                                        gAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGTGCCGCATCCCTTCGCCGACCATGCGCAGTTCAGTGcc  <  1:108851/150‑1 (MQ=255)                                                                                                                           |                                                                                                                                    GCGTGAGGCTGACGCGGTGCTGTTCAACGGCGCCAGCGAAGACCGCACCGATGGTTTCGGTTTCTGCCTGCAGCCGTCGGCCCTGGTCAACGTGCGCACTGGCGAGCGC‑CGTGCGCTCGACCATTTCCCCGCCGGCCAGCGCCTGCATGCGGTGGCCGGTATCGGCAACCCGCAACGTTTCTTCAACACCCTGCTGGGGCTAAACTGGCAGCCGGTGCCGCATCCCTTCGCCGACCATGCGCAGTTCAGTGCC  >  NC_002947/2144273‑2144525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.