New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5168047	20 (1.060)	4 (0.240)	4/216	NT	16.8%	intergenic (‑120/‑384)	hrpA/PP_4547	ATP‑dependent helicase HrpA/glutamine synthetase
	?	NC_002947	= 5168063	22 (1.340)					intergenic (‑136/‑368)	hrpA/PP_4547	ATP‑dependent helicase HrpA/glutamine synthetase

GTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5167886‑5168047 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggaagcggccttgCGGCCCTATCGCGACACAAGGCCGCTTCCACAGGGAGCGTGCAGGCAGCAGAGAATCCGCAAATCTGCGACAATCGCCCGACTTTCCGAATGCCGATCATGAAAAAGCAGGCTCACCTGCATCACTAAAAAGCCCCATGACTGACCA  <  NC_002947/5168063‑5167917                                                                                                                                                                                                                                                                                                                       GTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTG                                                                                                                                                                 <  2:141893/150‑1            GCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTT                                                                                                                                                      >  2:504408/1‑150                                                                                TGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGCGGCCCTATCGCGACACAAGGC                                                                                                                               <  1:37335/105‑1                                                                                TGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGCGGCCCTATCGCGACACAAGGC                                                                                                                               >  2:37335/1‑105                                                                                                        GATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGCGGCCCTATCGCGACACAA                                                                                                                                  <  1:309472/78‑1                                                                                                        GATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGCGGCCCTATCGCGACACAA                                                                                                                                  >  2:309472/1‑78                                                                                                                                                    GTGGAAGCGGCCTTGCGGCCCTATCGCGACACAAGGCCGCTTCCACAGGGAGCGTGCAGGCAGCAGAGAATCCGCAAATCTGCGACAATCGCCCGACTTTCCGAATGCCGATCATGAAAAAGCAGGCTCACCTGCATCACTAAAAAGCCC              <  2:175575/150‑1                                                                                                                                                                TTGCGGCCCTATCGCGACACAAGGCCGCTTCCACAGGGAGCGTGCAGGCAGCAGAGAATCCGCAAATCTGCGACAATCGCCCGACTTTCCGAATGCCGATCATGAAAAAGCAGGCTCACCTGCATCACTAAAAAGCCCCATGACTGACCA  <  1:436252/150‑1                                                                                                                                                                                                                                                                                                                       GTCGAGGTTTTGCAGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5167886‑5168047 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggaagcggccttgCGGCCCTATCGCGACACAAGGCCGCTTCCACAGGGAGCGTGCAGGCAGCAGAGAATCCGCAAATCTGCGACAATCGCCCGACTTTCCGAATGCCGATCATGAAAAAGCAGGCTCACCTGCATCACTAAAAAGCCCCATGACTGACCA  <  NC_002947/5168063‑5167917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.