| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5168047 | 20 (1.060) | 4 (0.240) | 4/216 | NT | 16.8% | intergenic (‑120/‑384) | hrpA/PP_4547 | ATP‑dependent helicase HrpA/glutamine synthetase |
| ? | NC_002947 | = 5168063 | 22 (1.340) | intergenic (‑136/‑368) | hrpA/PP_4547 | ATP‑dependent helicase HrpA/glutamine synthetase | |||||
AGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTACGCCGCATGTGAGTATCAAAGGCATGACTCCCGCCCAGC > NC_002947/5167899‑5168196 | agcagTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTtgt < 1:504408/150‑1 (MQ=255) gTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGAt > 1:172646/1‑150 (MQ=255) tGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGcaa < 1:436252‑M2/150‑4 (MQ=255) gggCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGcaaggccgcttccac < 2:175575‑M2/150‑16 (MQ=255) tGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGc > 1:154664/1‑150 (MQ=255) tGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGc > 2:429457/1‑150 (MQ=255) tGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGc < 1:175575/150‑1 (MQ=255) gCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTTGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCt > 2:246780/1‑150 (MQ=255) ccTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACg > 2:302383/1‑150 (MQ=255) gCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAAt < 1:22450/150‑1 (MQ=255) tGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGcggccctatcgcgacacaaggc < 1:37335‑M1/105‑23 (MQ=255) tGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGcggccctatcgcgacacaaggc > 2:37335‑M1/1‑83 (MQ=255) aaGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAgg < 1:246780/150‑1 (MQ=255) cGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGc < 2:502087/150‑1 (MQ=255) gggCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGcc > 2:62023/1‑150 (MQ=255) cGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCAtt < 1:462803/150‑1 (MQ=255) cGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCAtt < 1:302383/150‑1 (MQ=255) gATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGcggccctatcgcgacacaa > 2:309472‑M1/1‑59 (MQ=255) gATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGcggccctatcgcgacacaa < 1:309472‑M1/78‑20 (MQ=255) tctcTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTAcg < 2:172646/150‑1 (MQ=255) tctGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAAt > 1:204975/1‑138 (MQ=255) tctGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAAt < 2:204975/138‑1 (MQ=255) gCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTACGCCGCATGTGAGTATCa > 2:194597/1‑150 (MQ=255) tCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTaa > 2:152397/1‑121 (MQ=255) tCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTaa < 1:152397/121‑1 (MQ=255) cTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTACGCCGCATGTGAGTATCAAAGGc < 1:194597/150‑1 (MQ=255) gtgGAAGCGGCCTTGcggccctatcgcgacacaaggccgcttccacagggagcgtgcaggcagcagagaatccgcaaatctgcgacaatcgcccgactttccgaatgccgatcatgaaaaagcaggctcacctgcatcactaaaaagccc < 2:175575‑M1/150‑136 (MQ=255) aaGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTACGCCGCATGTGAGTATCAAAGGCATGACt > 2:26158/1‑150 (MQ=255) gCCTTGTGTCGCGATAGGGCCGcaaggccgcttccacagggagcgtgcaggcagcagagaatccgcaaatctgcgacaatcgcccgactttccgaatgccgatca > 2:37335‑M2/1‑22 (MQ=255) gCCTTGTGTCGCGATAGGGCCGcaaggccgcttccacagggagcgtgcaggcagcagagaatccgcaaatctgcgacaatcgcccgactttccgaatgccgatca < 1:37335‑M2/105‑84 (MQ=255) ttGcggccctatcgcgacacaaggccgcttccacagggagcgtgcaggcagcagagaatccgcaaatctgcgacaatcgcccgactttccgaatgccgatcatgaaaaagcaggctcacctgcatcactaaaaagccccatgactgacca < 1:436252‑M1/150‑148 (MQ=255) ttGTGTCGCGATAGGGCCGcaaggccgcttccacagggagcgtgcaggcagcagagaatccgcaaatctgcgacaatc > 2:309472‑M2/1‑19 (MQ=255) ttGTGTCGCGATAGGGCCGcaaggccgcttccacagggagcgtgcaggcagcagagaatccgcaaatctgcgacaatc < 1:309472‑M2/78‑60 (MQ=255) ttGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTACGCCGCATGTGAGTATCAAAg > 1:86148/1‑134 (MQ=255) ttGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTACGCCGCATGTGAGTATCAAAg < 2:86148/134‑1 (MQ=255) gtgtCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTACGCCGCATGTGAGTATCAAAGGCATGACTCCCgcccagc < 2:154664/150‑1 (MQ=255) | AGCAGTTTGTCGATGGCGTGGTCAGTCATGGGGCTTTTTAGTGATGCAGGTGAGCCTGCTTTTTCATGATCGGCATTCGGAAAGTCGGGCGATTGTCGCAGATTTGCGGATTCTCTGCTGCCTGCACGCTCCCTGTGGAAGCGGCCTTGTGTCGCGATAGGGCCGCAAGGCCGCTTCCACTTTGACCGTGGTGCTTTCAACACGAATGTTTAGCCAAGTGCGATGTAAAGGTTGCCATTCACTGCTTTAATCAACCTTACGCCGCATGTGAGTATCAAAGGCATGACTCCCGCCCAGC > NC_002947/5167899‑5168196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |