New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 726912	20 (1.060)	3 (0.160) +TT	3/242	NT	13.2%	intergenic (‑156/+111)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
	?	NC_002947	5571473 =	20 (1.060)					intergenic (+44/+97)	queG/yicG	epoxyqueuosine reductase/inner membrane protein

TTTTTCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTG  >  NC_002947/726764‑727055                                                                                                                                                     |                                                                                                                                                tttttCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCg                                                                                                                                                <  2:237548/150‑1 (MQ=255)   tttCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTg                                                                                                                                              >  2:11691/1‑150 (MQ=255)                                  cGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATac                                                                                                               >  1:40358/1‑150 (MQ=255)                                          gCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCgtggt                                                                                                       >  2:68633/1‑150 (MQ=255)                                             cGGACGGGTCAATGCTGGGGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCttgcccgcgaagcaggcaccacggtgtatggcaccggcttcgccg                                                                                                    <  1:261534‑M1/150‑46 (MQ=255)                                                       aaTGTTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGGTGCCTGCTTCGCgg                                                                                          <  1:11691/150‑1 (MQ=255)                                                                              gTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCggg                                                                                         >  2:91128/1‑128 (MQ=255)                                                                              gTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCggg                                                                                         <  1:91128/128‑1 (MQ=255)                                                                              gTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTc                                                                   >  2:414860/1‑150 (MQ=255)                                                                                               gTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCca                                                                           >  2:325037/1‑125 (MQ=255)                                                                                               gTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCca                                                                           <  1:325037/125‑1 (MQ=255)                                                                                                   gggagggaTATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAAc                                              >  2:204202/1‑150 (MQ=255)                                                                                                          atatGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATc                                       >  2:289098/1‑150 (MQ=255)                                                                                                          atatGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATc                                       <  2:409260/150‑1 (MQ=255)                                                                                                            atGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAg                                                      <  2:425360/133‑1 (MQ=255)                                                                                                            atGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAg                                                      >  1:425360/1‑133 (MQ=255)                                                                                                                 gAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCa                                <  1:289098/150‑1 (MQ=255)                                                                                                                 gAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCa                                >  1:424718/1‑150 (MQ=255)                                                                                                                   acacGAAATTGCAGATAAAAACTGTGGGAGCGGGCttgcccgcgaagcaggcaccacggtgtatggcaccggcttcgccggtgttcgcgggcacgc                                                                                    <  1:467144‑M1/96‑62 (MQ=255)                                                                                                                   acacGAAATTGCAGATAAAAACTGTGGGAGCGGGCttgcccgcgaagcaggcaccacggtgtatggcaccggcttcgccggtgttcgcgggcacgc                                                                                    >  2:467144‑M1/1‑35 (MQ=255)                                                                                                                       gAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtg                          <  2:40358/150‑1 (MQ=255)                                                                                                                       gAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTtg                          <  1:436563/150‑1 (MQ=255)                                                                                                                              cAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCa                   <  2:424718/150‑1 (MQ=255)                                                                                                                                   aaaaaCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGcc              <  1:68633/150‑1 (MQ=255)                                                                                                                                               aGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTg  >  1:3311/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                TTTTTCATATTTATGCGGATAAATAGGATTTAGCGAATTTTGCCCGGACGGGTCAATGCTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATACACCGTGGTGCCTGCTTCGCGGGCAAGCCCGCTCCCACAGATTTCGAATTGGTTTCAGGATTGAACAGACATCGTGTTCAGCCTTGGTGGCCAGGGCCCTGCTGCAGGTG  >  NC_002947/726764‑727055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.