New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 726912	20 (1.060)	3 (0.160) +TT	3/242	NT	13.2%	intergenic (‑156/+111)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
	?	NC_002947	5571473 =	20 (1.060)					intergenic (+44/+97)	queG/yicG	epoxyqueuosine reductase/inner membrane protein

ACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGT‑GGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGAT  >  NC_002947/5571328‑5571620                                                                                                                                                   |                                                                                                                                                    aCGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGTAGGCGT‑TGAGCATGCTCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCcg                                                                                                                                                 >  2:272315/1‑150 (MQ=255)              tCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGT‑GGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGACATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAac                                                                                                                                    >  1:133446/1‑150 (MQ=255)                                       cGATGAATCGGAATTGGTGCGCGAGCATGT‑GGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCg                                                                                                           <  2:337714/150‑1 (MQ=255)                                        cggacgggtcaatgctggggggggggaggggtcgtaaatggtgtgaaagggtcggggagggatatgtggaacacgaaattgcagataaaaactgtgggagcgggcttGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCg                                                                                                           <  1:261534‑M2/43‑1 (MQ=255)                                                                 aTGT‑GGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCcac                                                                                 >  2:170299/1‑150 (MQ=255)                                                                                       gTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAGTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGGCATGTTgcgcgggta                                                            >  1:165943/1‑145 (MQ=255)                                                                                        tCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTaa                                                           <  1:170299/150‑1 (MQ=255)                                                                                           cGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACTCCCGCTCCCACATGGGACCTCTTGCGCTTGTAAAtt                                                        <  1:272315/150‑1 (MQ=255)                                                                                           cGGAGCGCAATAGCGACCAGCCTCAGAGCATGAGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAAtt                                                        <  1:128189/150‑1 (MQ=255)                                                                                              aGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCg                                                     >  1:461346/1‑150 (MQ=255)                                                                                               gCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCCCTTCTAAATTGctt                                                    <  2:507172/150‑3 (MQ=255)                                                                                                    aTAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCActg                                               <  2:461346/150‑1 (MQ=255)                                                                                                       gCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCActgctg                                            >  1:65740/1‑150 (MQ=255)                                                                                                          aCCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTc                                         >  1:388433/1‑150 (MQ=255)                                                                                                              acacgaaattgcagataaaaactgtgggagcgggcttGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGc                                                                                           <  1:467144‑M2/59‑1 (MQ=255)                                                                                                              acacgaaattgcagataaaaactgtgggagcgggcttGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGc                                                                                           >  2:467144‑M2/38‑96 (MQ=255)                                                                                                                cTCAGAGCATGCGCAAGCCTGGGGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTCTCCGCGGCCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTa                                   <  2:3430/150‑1 (MQ=37)                                                                                                                  cAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGt                                 <  2:388433/150‑1 (MQ=255)                                                                                                                       cATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGCAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAAc                            >  1:101836/1‑150 (MQ=255)                                                                                                                            gcCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGc                                                      <  2:39366/119‑1 (MQ=255)                                                                                                                            gcCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGc                                                      >  1:39366/1‑119 (MQ=255)                                                                                                                                 ccTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCAttt                  <  2:65740/150‑1 (MQ=255)                                                                                                                                   ttGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTcc                >  1:416200/1‑150 (MQ=255)                                                                                                                                       gggAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGt            <  2:389104/150‑1 (MQ=255)                                                                                                                                                 gcgcCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGAt  >  2:198840/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACGATTCCGGTGATCGAGGCGCTGAAGGCCAGGCGTGACGATGAATCGGAATTGGTGCGCGAGCATGT‑GGAGTGGGCGCTGGCCCGTCACGGAGCTCAATAGCGACCAGCCTCAGAGCATGCGCCATCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGAT  >  NC_002947/5571328‑5571620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.