New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 785264	18 (0.960)	4 (0.230)	4/232	NT	17.0%	coding (665/3831 nt)	PP_0672	sensory box protein
	?	NC_002947	= 785293	22 (1.240)					coding (636/3831 nt)	PP_0672	sensory box protein

TGGCAGCAGGGCGCAGAACAGCACCAGCAGGCACTTGCCGAGCAGCGCCGGCAATAATTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTCCAGCAGCCACTGCGGGTGGCCACTGCCCTCGAGGTGGAGGGTGAGCTCGCGGTAATAGTCCGGTGACAGGCGCAGCAGCC  >  NC_002947/785122‑785405                                                                                                                                               |                                                                                                                                              tGGCAGCAGGGCGCAGAACAGCACCAGCAGGCACTTGCCGCGCAGCGCCGGCAATAATTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCtcgtc                                                                                                                                        >  1:500755/1‑150 (MQ=255)                gAACAGCACCAGCAGGCACTTGCCGAGCAGCGCCGGCAATAATTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGccatgccgcagccgacaccagc                                                                                                                         >  2:502890‑M1/1‑128 (MQ=255)                                cACTTGCCGAGCAGCGCCGGCAATAATTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGccatgccgcagccgacaccagcgacgagccgctgcaaa                                                                                                         <  1:502890‑M1/150‑39 (MQ=255)                                 aCTTGCCGAGCAGCGCCGGCAATAATTTTTGCTGGGCCAGATTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCAGCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTgcagca                                                                                                        >  1:484845/1‑150 (MQ=255)                                      ccGAGCAGCGCCGGCAATAATTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTcg                                                                                                   >  2:79743/1‑150 (MQ=255)                                       cGAGCAGCGCCGGCAATAATTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTcgc                                                                                                  <  2:459204/150‑1 (MQ=255)                                                  agCAATAATTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGTTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTg                                                                                       >  2:32344/2‑150 (MQ=255)                                                     aataatTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCTGCTCGTCGCTGgt                                                                                                                                  <  2:427059/104‑1 (MQ=255)                                                     aataatTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGgt                                                                                                                                  >  1:427059/1‑104 (MQ=255)                                                       taatTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGgtgt                                                                                                                                >  2:362793/1‑104 (MQ=255)                                                       taatTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGgtgt                                                                                                                                <  1:362793/104‑1 (MQ=255)                                                       taatTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTc                                                                                  <  2:167679/150‑1 (MQ=255)                                                                               gTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGccatgccgcagccgacaccagcgacgagccgctgcaaagcgtgatgctgg                                                                                             <  1:426982‑M1/115‑51 (MQ=255)                                                                               gTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGccatgccgcagccgacaccagcgacgagccgctgcaaagcgtgatgctgg                                                                                             >  2:426982‑M1/1‑65 (MQ=255)                                                                                     cAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTCCAGCAGCCACTGCGGGTGGCCACTGCCCTc                                                    <  1:79743/150‑1 (MQ=255)                                                                                     cAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTCCAGCAGCCACTGCGGGTGGCCACTGCCCTc                                                    >  1:186537/1‑150 (MQ=255)                                                                                                           cTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGACGGACTTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTCCAGCAGCCACTGCGGGTGGCCACTGCCCTCGAGGTGGAGGGTGAGCTCGCgg                              <  1:281078/150‑1 (MQ=255)                                                                                                                 tCGATAAAGGCCAGCATCACGCTTTGAGGCTGGTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGGTGTTTTCCAGCAGCCACTGCGGGTGGCCACTGCCCTCGAGGTGGAGGGTGAGCTCGCGGTAATAg                        >  1:347291/1‑150 (MQ=255)                                                                                                                    aTAAAGGCCCGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTCCAGCCCCTCGCCGCTGCGGCTGTTTTCCAGCAGCCACTGCGGGTGGCCACTGCCCTCGAGGTGGAGGGTGAGCTCGCGGTAACAGTcc                     >  2:9156/1‑150 (MQ=255)                                                                                                                        aGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTc                                                                                  >  2:296292/1‑85 (MQ=255)                                                                                                                        aGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTc                                                                                  <  1:296292/85‑1 (MQ=255)                                                                                                                           ccAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGcgctgcaaagcgtgatgctggcctttatcgaaaacagcacctggcagctacgcggtctgttcgac                                                 >  2:426982‑M2/1‑50 (MQ=255)                                                                                                                           ccAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGcgctgcaaagcgtgatgctggcctttatcgaaaacagcacctggcagctacgcggtctgttcgac                                                 <  1:426982‑M2/115‑66 (MQ=255)                                                                                                                            cAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTCCAGCAGCCACTGCGGGTGGCCACTGCCCTCGAGGTGGAGGGTGAGCTCGCGGTAATAGTCCGGTGACAg             >  2:436654/1‑150 (MQ=255)                                                                                                                                       tttGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGcgctgcaaagcgtgatgctggcctttatcgaaaacagcacctggcagctacgcggtctgttcgacgccaaactggcccagcaaaaattattgccggcgctgctcggcaagtg  <  1:502890‑M2/150‑113 (MQ=255)                                                                                                                                               |                                                                                                                                              TGGCAGCAGGGCGCAGAACAGCACCAGCAGGCACTTGCCGAGCAGCGCCGGCAATAATTTTTGCTGGGCCAGTTTGGCGTCGAACAGACCGCGTAGCTGCCAGGTGCTGTTTTCGATAAAGGCCAGCATCACGCTTTGCAGCGGCTCGTCGCTGGTGTCGGCTGCGGCATGGCGCTGCAGCACCTCGCCGCTGCGGCTGTTTTCCAGCAGCCACTGCGGGTGGCCACTGCCCTCGAGGTGGAGGGTGAGCTCGCGGTAATAGTCCGGTGACAGGCGCAGCAGCC  >  NC_002947/785122‑785405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.