New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	820860 =	25 (1.330)	4 (0.220)	4/240	NT	14.2%	coding (228/2412 nt)	PP_0707	hypothetical protein
	?	NC_002947	820883 =	24 (1.310)					coding (251/2412 nt)	PP_0707	hypothetical protein

GCCTGGTCGGCCCCGGCCACGCCATTGTCCAACCTGGCGGCTGCCGAGGCGCCCGCACTGGACGAAAACGCCAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAGGCCGCTACCCTGACGCAGCAGC  >  NC_002947/820711‑821005                                                                                                                                                      |                                                                                                                                                   ctttttctcggcctccagcgctttgcgctgctgcgtcagggtagcggcctcgtccggctgggccgggccgatgatatttagctggtcgtcgagttttcccacatcggcagtgcgcagcgcactcaatgcatcagcttgacgctgaacctg                                                                                                                                                    <  1:316437‑M1/1‑1 (MQ=255)                      tttgcgctgctgcgtcagggtagcggcctcgtccggctgggccgggccgatgaccttcagctggtcgtcgagttttcccacatcggcagtgcgcagcgcactcaatgcatcagcttgacgctgaacctGCAACTGCGCCTGGGCGC‑GATg                                                                                                                              <  1:307789‑M1/22‑1 (MQ=255)                       cATTGTCCAACCTGGCGGCTGCCGAGGCGCCCGCACTGGACGAAAACGCCAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCAGCATCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGTGC‑GATGc                                                                                                                             >  1:239003/1‑150 (MQ=255)                                          tGCCGAGGCGCCCGCACTGGACGAAAACGCCAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGa                                                                                                          <  1:279030/150‑1 (MQ=255)                                          ggCCGAGGCGCCCGCACTGGACGAAAACGCCAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGa                                                                                                          <  2:126483/149‑1 (MQ=255)                                             cGAGGCGCCCGCACTGGACGAAAACGCCAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGc                                                                                                       >  1:245399/1‑150 (MQ=255)                                                    cccGCACTGGACGAAAACGCCAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGt                                                                                                >  2:444080/1‑150 (MQ=255)                                                    cccGCACTGGACGAAAACGCCAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGt                                                                                                >  2:275046/1‑150 (MQ=255)                                                                       ccAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGACGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGAtg                                                                             <  1:417554/150‑1 (MQ=255)                                                                           ccTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGAtgt                                                                            >  1:210847/1‑147 (MQ=255)                                                                           ccTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGAtgt                                                                            <  2:210847/147‑1 (MQ=255)                                                                             tCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GAt                                                                                                                               <  2:508800/94‑1 (MQ=255)                                                                             tCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GAt                                                                                                                               >  1:508800/1‑94 (MQ=255)                                                                             tCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGaa                                                                       >  2:179737/1‑150 (MQ=255)                                                                               gAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGaaaa                                                                     <  1:444080/150‑1 (MQ=255)                                                                                  caacTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTc                                                                  <  2:113311/150‑1 (MQ=255)                                                                                        gtcgagttttcccacatcggcagtgcgcagcgcactcaatgcatcagcttgacgctgaacctGCAACTGCGCCTGGGCGC‑GATGCAg                                                                                                                           >  1:486412‑M1/63‑87 (MQ=255)                                                                                        gtcgagttttcccacatcggcagtgcgcagcgcactcaatgcatcagcttgacgctgaacctGCAACTGCGCCTGGGCGC‑GATGCAg                                                                                                                           <  2:486412‑M1/25‑1 (MQ=255)                                                                                                cTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGCCGACCCGCTgca                                                    >  2:25689/1‑148 (MQ=255)                                                                                                cTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGaa                                                    <  1:25689/150‑1 (MQ=255)                                                                                                cTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGaa                                                    <  2:245399/150‑1 (MQ=255)                                                                                                           tCCGCCAAGGCGTAACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATcggcc                                         >  1:125239/1‑150 (MQ=255)                                                                                                                cAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGTAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATcggcccggcc                                    >  1:391136/1‑150 (MQ=255)                                                                                                                             gCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAgg                       >  2:316437/1‑150 (MQ=255)                                                                                                                               gAGGCTAACGACGACGTGCTGTCGCAACTGCCGCCCAGCAC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAGGcc                     <  2:373827/150‑1 (MQ=255)                                                                                                                                   tcagcttgacgctgaacctGCATC‑GCGCCCAGGCGCAGTTGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAGGCCGCTa                 <  2:307789‑M1/131‑1 (MQ=255)                                                                                                                                    tAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAGGCCGCTAc                >  2:88652/1‑150 (MQ=255)                                                                                                                                       cgacgacgTGCTGTCGCCACTGCGCCTGGGCGC‑GATGCAGTTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCAAACTGCCGATGTTGGAAAACTCGACGACCAGCTGAAGCTCAGCGGCCCCGCCCAGCCGGACGAGGACGCTACCCt             <  2:166644/150‑1 (MQ=255)                                                                                                                                         acgacgTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAGGCCGCTACCCTGa           <  1:179737/150‑1 (MQ=255)                                                                                                                                          cgacgTGCTGTCGCAACTGCGCCTGGGCTG‑GATCCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTACTCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAGGCCGCTACCCTGAc          <  1:469755/150‑1 (MQ=255)                                                                                                                                                  tGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAGGCCGCTACCCTGACGCagcagc  <  2:298382/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCCTGGTCGGCCCCGGCCACGCCATTGTCCAACCTGGCGGCTGCCGAGGCGCCCGCACTGGACGAAAACGCCAGCCTCGAACAACTGAGCGACCGCTTGGACCTCATCCGCCAAGGCGTCACCAGCGAGGCTAACGACGACGTGCTGTCGCAACTGCGCCTGGGCGC‑GATGCAGGTTCAGCGTCAAGCTGATGCATTGAGTGCGCTGCGCACTGCCGATGTGGGAAAACTCGACGACCAGCTGAAGGTCATCGGCCCGGCCCAGCCGGACGAGGCCGCTACCCTGACGCAGCAGC  >  NC_002947/820711‑821005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.