New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	851021 =	21 (1.120)	3 (0.160)	3/242	NT	12.9%	intergenic (‑601/‑204)	pcs/hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
	?	NC_002947	= 2085560	20 (1.080)					intergenic (+226/‑369)	PP_1864/PP_1865	hypothetical protein/transposase

CTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAGGGCAGGCTACGAAAAGGCGATAGCCGCTGCGCTATCAGCACAATAGCGAACGGTGGTTGTC  >  NC_002947/850873‑851168                                                                                                                                                     |                                                                                                                                                    cttctaagcgcgcggtagttcaggcgatgcagattgcgacttcaggaggccgagcgcagggcttgcggagggaggtgacgggcatggatgcccgtcaagcgctgggccccaggatggggcctgcagcgcggtcctcccgggagcaagccc                                                                                                                                                    <  2:57388‑M1/2‑1 (MQ=255)  ttCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCt                                                                                                                                                   >  1:83230/1‑150 (MQ=255)           cgcgGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGc                                                                                                                                          <  1:172739/150‑1 (MQ=255)                          gcTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCg                                                                                                                                            <  2:8185/133‑1 (MQ=255)                          gcTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCg                                                                                                                                            >  1:8185/1‑133 (MQ=255)                               aGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCCAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatc                                                                                                                      <  1:352137/150‑1 (MQ=255)                                    gCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagat                                                                                                                 <  2:183258/150‑1 (MQ=255)                                        cTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAgg                                                                                                             >  1:375249/1‑150 (MQ=255)                                         ttCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGa                                                                                                            >  2:170732/1‑150 (MQ=255)                                           cAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATc                                                                                                          <  1:16935/150‑1 (MQ=255)                                            aggaggCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCa                                                                                                         >  2:502955/1‑150 (MQ=255)                                               aggCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGAGCTTGACAGCGATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCaaaa                                                                                                      <  1:160555/150‑1 (MQ=255)                                                    gAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAg                                                                                                 >  2:294149/1‑150 (MQ=255)                                                     aGCGTCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGa                                                                                                <  1:21475/150‑1 (MQ=255)                                                     aGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGa                                                                                                <  1:294149/150‑1 (MQ=255)                                                              cttgcgcagggaggtgacgggcatggatgcccgtcaagcgctgtgcccgaggatggggcctgcagcgcggtcctcccgggagcaagcCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAg                                                                                                              <  2:507157‑M1/40‑1 (MQ=255)                                                              cttgcgcagggaggtgacgggcatggatgcccgtcaagcgctgtgcccgaggatggggcctgcagcgcggtcctcccgggagcaagcCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAg                                                                                                              >  1:507157‑M1/88‑127 (MQ=255)                                                                        gaggtgacgggcatggatgcccgtcaagcgctgtgcccgaggatggggcctgcagcgcggtcctcccgggagcaagcCCTACGCTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCt                                                                             <  2:339738‑M1/73‑1 (MQ=255)                                                                                gcgcTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAacac                                                                     <  2:375249/150‑1 (MQ=255)                                                                                 cgcTGCACGCCCCACCCTCCGCCACAGCGTTGGACCGGCATCCATTCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACAcc                                                                    <  2:386878/150‑1 (MQ=25)                                                                                               tCCTCGGGCACAGCGCTTGACGGGCATACATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAAGGCAGGCTa                                                      >  2:102090/1‑150 (MQ=255)                                                                                                    gggCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAGGGCAGGCTACGaaa                                                 >  2:25968/1‑150 (MQ=255)                                                                                                            cgcTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAGGGCAGGCTACGAAAAGGCGATa                                         <  1:502955/150‑1 (MQ=255)                                                                                                                   cGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAGGGCAGGCTACGAAAAGGCGATAGCCGCTg                                  <  1:72612/150‑1 (MQ=255)                                                                                                                           cATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAGGGCAGGCTACGAAAAGGCGATAGCCGCTGCGCTATCa                          <  1:170732/150‑1 (MQ=255)                                                                                                                                              cgcAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAGGGCAGGCTACGAAAAGGCGATAGCCGCTGCGCTATCAGCACAATAGCGAACggtgg       <  2:83230/150‑1 (MQ=255)                                                                                                                                                   ggCCTGCGTGCGCCCACCTCAAGTCGCAAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAGGGCAGGCTACGAAAAGGCGATAGCCGCTGCGCTATCAGCACAATAGCGAACGGTGGTTGTc  <  2:335833/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTTCTAAGCGCGCGGTTGATCAGGCGCTGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAGGATCAAAAGCCAGATCAAAAGCCGGCAAGACCTGAAAACACCGCTAGGGCAGGCTACGAAAAGGCGATAGCCGCTGCGCTATCAGCACAATAGCGAACGGTGGTTGTC  >  NC_002947/850873‑851168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.