New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1273270	24 (1.280)	5 (0.300)	5/216	NT	18.2%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1273329	24 (1.460)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein

TCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTA  >  NC_002947/1273130‑1273419                                                                                                                                             |                                                                                                                                                      tCGAGACCACCCTGGTGACCATCGCC‑ATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGa                                                                                                                                             >  1:94770/1‑150 (MQ=255)                    cATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCgcgcccgcgaacacgggcgaagcccgtg                                                                                                                           >  1:385370‑M1/1‑122 (MQ=255)                      tCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCgcgcccgcgaacacgggcgaagcccgtgcc                                                                                                                         >  1:333368‑M1/1‑120 (MQ=255)                                       ctctGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCgt                                                                                                        >  2:461551/1‑150 (MQ=255)                                         ctGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCgtgt                                                                                                      >  1:139848/1‑150 (MQ=255)                                               ccAGGACCTGTTGGGTGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                                <  2:232319/150‑1 (MQ=255)                                                    aCCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttg                                                                                           <  1:481214‑M1/150‑61 (MQ=255)                                                          tGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgcccgct                                                                                     <  2:333368‑M1/150‑67 (MQ=255)                                                               gCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgcccgctcccac                                                                                <  2:385370‑M1/150‑72 (MQ=255)                                                                cAAACCGGCGAAAGGCCGCGTAGCCATCCCTGTCACGCCGCTCTTCCGGACGCGGGCACGGAAACTTGGTGGGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCTCGGGTTCGCGGGCGCGCCCGCTCCcaca                                                                               <  2:492002/150‑1 (MQ=21)                                                                    ccGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAgtgt                                                                           >  1:319710/1‑150 (MQ=255)                                                                     cGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGtt                                                                          <  2:139848/150‑1 (MQ=255)                                                                            aGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCa                                                                   >  2:98179/1‑150 (MQ=255)                                                                             ctccGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAAATGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCATGGCTGGTGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCAt                                                                  <  1:474102/148‑1 (MQ=38)                                                                                 gcgTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCAtctct                                                              >  1:329457/1‑150 (MQ=255)                                                                                  cgTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGCTTGGCACGTGCTGCTCGCTTTTGCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCAtctctc                                                             <  1:9745/150‑1 (MQ=38)                                                                                       ccACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAgg                                                                                                                                       <  1:244273/71‑1 (MQ=255)                                                                                       ccACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAgg                                                                                                                                       >  2:244273/1‑71 (MQ=255)                                                                                                   ggCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCCGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCGCCCACAGTGTTCGCGCCATCTCTCGGATTTTTATCGCGTcc                                            >  1:300719/1‑149 (MQ=255)                                                                                                        aTGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATg                                                                                                                         <  2:383293/68‑1 (MQ=255)                                                                                                        aTGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATg                                                                                                                         >  1:383293/1‑68 (MQ=255)                                                                                                                   gCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGt                            <  1:98179/150‑1 (MQ=255)                                                                                                                    cTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTg                           <  2:319710/150‑1 (MQ=255)                                                                                                                       gCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGt                                              >  2:271510/1‑128 (MQ=255)                                                                                                                       gCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGt                                              <  1:271510/128‑1 (MQ=255)                                                                                                                           gcaaaCTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCActtc                    <  1:433054/148‑1 (MQ=255)                                                                                                                                  gtgGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggtttgc             <  2:385370‑M2/150‑80 (MQ=255)                                                                                                                                   tgGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTActt            >  2:203343/1‑150 (MQ=255)                                                                                                                                   gttgAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTActt            >  1:399964/4‑150 (MQ=255)                                                                                                                                       aGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggtttgccccca        <  2:333368‑M2/150‑85 (MQ=255)                                                                                                                                       aGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACttcttc        <  2:94770/150‑1 (MQ=255)                                                                                                                                             cAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggtttgcccccaacaggt  <  1:481214‑M2/150‑91 (MQ=255)                                                                                                                                             |                                                                                                                                                      TCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTA  >  NC_002947/1273130‑1273419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.