| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1696895 | 16 (0.850) | 3 (0.170) | 3/232 | NT | 15.4% | coding (886/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 1696922 | 18 (1.020) | coding (913/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator | |||||
TTGGCACAGACCCAGCGCCTGCTGGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTG > NC_002947/1696757‑1697044 | ttGGCACAGACCCAGCGCCTGCTGGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGAc > 1:372240/1‑150 (MQ=255) ccTGCTGGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAg < 1:8427‑M2/150‑2 (MQ=255) tgGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAgccgca < 1:341592‑M2/150‑7 (MQ=255) gCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCtttgcccggtcagcacgtcggcaaacggccgcatc < 1:175566‑M1/150‑36 (MQ=255) gCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCt < 2:8427/150‑1 (MQ=255) ttCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGcc > 2:137506/1‑150 (MQ=255) gcagcagcaGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCtttgcccggtcagcacgtcggcaaacggccgca > 1:382253‑M1/1‑95 (MQ=255) gcagcagcaGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCtttgcccggtcagcacgtcggcaaacggccgca < 2:382253‑M1/128‑34 (MQ=255) agcagcagGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGc > 1:55929/1‑150 (MQ=255) agcagGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTgg < 1:137506/150‑1 (MQ=255) cggcCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGc < 2:341592/150‑1 (MQ=255) acgctggCTGGCCTGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCtggtgg > 1:201149/6‑150 (MQ=255) cGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGa < 2:3193/150‑1 (MQ=255) gccagcGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTg < 1:296034/98‑1 (MQ=255) gccagcGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTg > 2:296034/1‑98 (MQ=255) gcGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTACAAATCGGGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGt > 2:378274/1‑150 (MQ=255) cgcAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGAcc < 2:372240/150‑1 (MQ=255) ttgttgTAGGACCCTCCCCTGGCCTGACGGGTGCCGGCGTTTTTCGACTTGCTGACCGGGCAAAGCCGCATGGTCCGCGACTTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGAt < 2:55929/150‑1 (MQ=255) gtATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCt < 2:201149/150‑1 (MQ=255) aTGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCCGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTgg > 2:155607/1‑150 (MQ=255) cTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGaa < 2:192356/150‑1 (MQ=255) gATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAgccgcatccggcaggccagggcagtgtcatacaacaactgcgcacgctggctggcctgccagccgaactcatccaggtcggccgcctgctgctgcagaatccgctgggtctctgc < 1:175566‑M2/150‑116 (MQ=255) tGCGGCtttgcccggtcagcacgtcggcaaacggccgcatccggcaggccagggcagtgtcatacaacaactgcgcacgctggctggcctgccagccgaactcatccaggtcggccgcctgctgctgcagaatccgctgggtctctgcca < 1:341592‑M1/150‑145 (MQ=255) tGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAgccgcatccggcaggccagggcagtgtcatacaacaactgcgcacgctggctggcctgccagccgaactcatccaggtcggccgcctgctgctgc > 1:382253‑M2/1‑33 (MQ=255) tGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAgccgcatccggcaggccagggcagtgtcatacaacaactgcgcacgctggctggcctgccagccgaactcatccaggtcggccgcctgctgctgc < 2:382253‑M2/128‑96 (MQ=255) ctttgcccggtcagcacgtcggcaaacggccgcatccggcaggccagggcagtgtcatacaacaactgcgcacgctggctggcctgccagccgaactcatccaggtcggccgcctgctgctgcagaatccgctgggtctctgccagcagg < 1:8427‑M1/150‑150 (MQ=255) | TTGGCACAGACCCAGCGCCTGCTGGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTG > NC_002947/1696757‑1697044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |