New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1696895	16 (0.850)	3 (0.170)	3/232	NT	15.4%	coding (886/2289 nt)	PP_1492	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 1696922	18 (1.020)					coding (913/2289 nt)	PP_1492	two‑component system sensor histidine kinase/response regulator

CCTGCTGGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCA  >  NC_002947/1696774‑1697069                                                                                                                                                     |                                                                                                                                                    ccTGCTGGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAg                                                                                                                                                    <  1:8427‑M2/150‑2 (MQ=255)      tgGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAgccgca                                                                                                                                               <  1:341592‑M2/150‑7 (MQ=255)                   gCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCt                                                                                                                                  <  2:8427/150‑1 (MQ=255)                        ttCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGcc                                                                                                                             >  2:137506/1‑150 (MQ=255)                              agcagcagGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGc                                                                                                                       >  1:55929/1‑150 (MQ=255)                                 agcagGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTgg                                                                                                                    <  1:137506/150‑1 (MQ=255)                                       cggcCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGc                                                                                                              <  2:341592/150‑1 (MQ=255)                                                      acgctggCTGGCCTGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCtggtgg                                                                                               >  1:201149/6‑150 (MQ=255)                                                          cGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGa                                                                                           <  2:3193/150‑1 (MQ=255)                                                                        gccagcGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTg                                                                                                                                 <  1:296034/98‑1 (MQ=255)                                                                        gccagcGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTg                                                                                                                                 >  2:296034/1‑98 (MQ=255)                                                                            gcGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTACAAATCGGGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGt                                                                         >  2:378274/1‑150 (MQ=255)                                                                                 cgcAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGAcc                                                                    <  2:372240/150‑1 (MQ=255)                                                                                      ttgttgTAGGACCCTCCCCTGGCCTGACGGGTGCCGGCGTTTTTCGACTTGCTGACCGGGCAAAGCCGCATGGTCCGCGACTTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGAt                                                               <  2:55929/150‑1 (MQ=255)                                                                                           gtATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCt                                                          <  2:201149/150‑1 (MQ=255)                                                                                             aTGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCCGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTgg                                                        >  2:155607/1‑150 (MQ=255)                                                                                                        cTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGaa                                             <  2:192356/150‑1 (MQ=255)                                                                                                                   gATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAgccgcatccggcaggccagggcagtgtcatacaacaactgcgcacgctggctggcctgccagccgaactcatccaggtcggccgcctgctgctgcagaatccgctgggtctctgc                                  <  1:175566‑M2/150‑116 (MQ=255)                                                                                                                     tGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAgccgcatccggcaggccagggcagtgtcatacaacaactgcgcacgctggctggcctgccagccgaactcatccaggtcggccgcctgctgctgc                                                      >  1:382253‑M2/1‑33 (MQ=255)                                                                                                                     tGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAgccgcatccggcaggccagggcagtgtcatacaacaactgcgcacgctggctggcctgccagccgaactcatccaggtcggccgcctgctgctgc                                                      <  2:382253‑M2/128‑96 (MQ=255)                                                                                                                              ttGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTgc                       <  1:157664/150‑1 (MQ=255)                                                                                                                                      gTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGcc               <  1:294334/150‑1 (MQ=255)                                                                                                                                         cTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTc            >  2:499001/1‑150 (MQ=255)                                                                                                                                                   aaaGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCATGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCa  >  2:479179/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCTGCTGGCAGAGACCCAGCGGATTCTGCAGCAGCAGGCGGCCGACCTGGATGAGTTCGGCTGGCAGGCCAGCCAGCGTGCGCAGTTGTTGTATGACACTGCCCTGGCCTGCCGGATGCGGCCGTTTGCCGACGTGCTGACCGGGCAAAGCCGCATGGTCCGCGACCTGGGCCGTTCGCTGGGCAAGCCGGTGCGGCTGGTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCA  >  NC_002947/1696774‑1697069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.