New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1844176 =	7 (0.370)	6 (0.330)	6/236	NT	25.2%	coding (660/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 2179419	29 (1.610)					intergenic (+175/+93)	PP_1931/PP_5486	hypothetical protein/hypothetical protein

TTCTGGATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAACAGGCTGGT  >  NC_002947/1844030‑1844322                                                                                                                                                   |                                                                                                                                                   cccaaaagacctcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTc                                                                                                                                                 <  1:88010‑M1/4‑1 (MQ=255)  ccaaaagacctcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCg                                                                                                                                                <  2:66418‑M1/5‑1 (MQ=255)                    gactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGt                                                                                                                              <  1:403592‑M1/23‑1 (MQ=255)                       tcacatcgcgacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGc                                                                                                                           <  2:114686‑M1/26‑1 (MQ=255)                                       gccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGAtt                                                                                                           >  2:88010‑M1/109‑150 (MQ=255)                                               acggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGt                                                                                                   >  1:114686‑M1/101‑150 (MQ=255)                                                   gTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCtt                                                                                               <  2:343698/150‑1 (MQ=255)                                                                      caatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCg                                                                            >  2:403592‑M1/78‑150 (MQ=255)                                                                            tGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATg                                                                      <  2:224092/150‑1 (MQ=255)                                                                                ccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGGGTTCGATGGGGTCGTTGATGGTGc                                                                  <  2:190398‑M1/83‑1 (MQ=255)                                                                                                      gCGGTTGATGCCGTGGGCCAGTTCGTCCACCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAg                                            <  1:203889/150‑1 (MQ=255)                                                                                                        ggTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACAGCGTGCTTGATGCGTTCGATGGGGTCGTTGAGGGTGCGGCTCATGCGCAGCGCCAACAgac                                          >  2:193273/1‑148 (MQ=255)                                                                                                         gTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGcc                                         >  1:407167/1‑150 (MQ=255)                                                                                                                             cggcgggCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGa                     <  2:11645/144‑1 (MQ=255)                                                                                                                                  aGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATc                <  1:308814/150‑1 (MQ=255)                                                                                                                                              gcctgGGTCGGCAGGCGTTCTTCGATGTGGCCGTCCTTGAGCTGATTCACCGCGTGCTTGATGCGTTCGATGGCGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGACGATCAGCAACATGCTg    >  1:190398‑M1/6‑150 (MQ=255)                                                                                                                                                cATGGTCGGCAGGCGTTCTTCGAGGTGGGCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGCAAGTTAGGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAACAGGCTGGt  >  1:443650/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TTCTGGATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAACAGGCTGGT  >  NC_002947/1844030‑1844322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.