New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1844176 = | 7 (0.370) | 6 (0.330) | 6/236 | NT | 25.2% | coding (660/2754 nt) | gacS | sensor protein GacS |
? | NC_002947 | = 2179419 | 29 (1.610) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein |
CCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCACGATCT > NC_002947/2179274‑2179564 | cccAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtc < 1:88010‑M2/150‑5 (MQ=255) ccAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcg < 2:66418‑M2/150‑6 (MQ=255) ccTCAAGAACGACTCACATCGCCACATGCGTCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGcggc < 1:129152/150‑1 (MQ=255) ccTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGcggc > 1:410629/1‑150 (MQ=255) ccTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGACAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGcggc > 1:382609/1‑150 (MQ=255) gACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggt < 1:403592‑M2/150‑24 (MQ=255) cgatctcaTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGatca < 1:40543/144‑1 (MQ=255) aCTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGatcat > 2:495633/1‑150 (MQ=255) cTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCCTCAACTCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGatcatc < 2:378094/150‑1 (MQ=255) tCACATCGCGACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggc < 2:114686‑M2/150‑27 (MQ=255) acaTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAAGCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGc > 1:499445/1‑150 (MQ=255) acaTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGcgg < 1:162675/134‑1 (MQ=255) acaTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGcgg > 2:162675/1‑134 (MQ=255) aTCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACTGATAGGGTCTATAGCGGCCGGCCGatcatagatcg > 2:40543/1‑144 (MQ=255) tCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCCTAAACGCATTTCGCGTGTTTTCACACAGCCTGGGACGATAGCGGCCGGCCGGTCATCAGCGaa > 2:128781/1‑150 (MQ=255) gCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAg < 1:274958/150‑1 (MQ=255) ccACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAgg < 1:495633/150‑1 (MQ=255) gcCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgatt > 2:88010‑M2/1‑108 (MQ=255) cccAGAACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCg > 2:19168/1‑150 (MQ=255) aCGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgt > 1:114686‑M2/1‑100 (MQ=255) gCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTa < 2:67226/145‑1 (MQ=255) gCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTa > 1:67226/1‑145 (MQ=255) cAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgcgttcgatggggtcg > 2:403592‑M2/1‑77 (MQ=255) aaTTTCTTGACAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATgg < 2:382609/150‑1 (MQ=255) ccAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGggtcggcaggcgttcttcgaggtggccgtccttgagctgattgaccgcgtgcttgatgggttcgatggggtcgttgatggtgc < 2:190398‑M2/150‑84 (MQ=255) tttGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCTAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCaga < 1:19168/150‑1 (MQ=255) ctAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTc < 2:67153/150‑1 (MQ=255) cTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTg > 2:421453/1‑150 (MQ=255) tCAACGCATTTCGCGTGTTTTCACCCAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGc > 1:120546/1‑150 (MQ=255) aaCGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCt > 1:294056/1‑150 (MQ=255) cacacaGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAg > 2:275651/1‑94 (MQ=255) cacacaGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAg < 1:275651/94‑1 (MQ=255) acacaGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGa < 2:407371/126‑1 (MQ=255) acacaGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGa > 1:407371/1‑126 (MQ=255) acaGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCACGa < 1:66418/150‑1 (MQ=255) aGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGa < 2:265540/116‑1 (MQ=255) aGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGa > 1:265540/1‑116 (MQ=255) gCCTGggtcggcaggcgttcttcgatgtggccgtccttgagctgattcaccgcgtgcttgatgcgttcgatggcgtcgttgatggtgcggctcatgcgcagcgccaacaggccgctgagtgccaggcaggcgacgatcagcaacatgctg > 1:190398‑M2/1‑5 (MQ=255) | CCCAAAAGACCTCAAGAACGACTCACATCGCCACATGCGCCCCAGCACGGCGATTTGAGCTAAACCACGCAATTTCTTGCCAGTTTGGCAAGCCTCTCTAGATCCCTGCGCCCTTCAACGCATTTCGCGTGTTTTCACACAGCCTGGGTCGATAGCGGCCGGCCGATCATCAGCGAAAGGGCTAGCCTCGCTTTCCGCAAATGCCCGACCGTATCGATGGGGTTTCTAGCAGAGGCGATCACCCCTCATCTCCTGAGTTCGAGCCTTCTCGGATTCGCTTAAGCACGATCT > NC_002947/2179274‑2179564 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |