New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2449107 =	26 (1.380)	3 (0.170)	3/232	NT	13.2%	coding (2019/3318 nt)	PP_2146	SNF2/RAD54 family helicase
	?	NC_002947	2449143 =	15 (0.850)					coding (1983/3318 nt)	PP_2146	SNF2/RAD54 family helicase

CTGCGCCCCGGCCCATGCAGTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTAC  >  NC_002947/2448964‑2449253                                                                                                                                                |                                                                                                                                                   ctgcGCCCCGGCCCATGCAGTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGcc                                                                                                                                              >  1:282890/1‑150 (MQ=255)      ccccGGCCCATGCAGTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGc                                                                                                                                         <  1:210163/150‑1 (MQ=255)           gCCCATGCAGTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCa                                                                                                                                    <  1:463155/150‑1 (MQ=255)            cccATGCAGTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAg                                                                                                                                   <  2:282890/150‑1 (MQ=255)                tGCAGTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGACGTGATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTc                                                                                                                               <  1:240629/150‑1 (MQ=255)                    gTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGc                                                                                                                           <  1:185219/150‑1 (MQ=255)                    gTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGc                                                                                                                           <  1:345827/150‑1 (MQ=255)                        cAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAg                                                                                                                       <  1:247017/150‑1 (MQ=255)                              gcgcAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGCGTGTTTCTCCCGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCAt                                                                                                                 >  2:268736/1‑150 (MQ=255)                               aggtagaaccgcccaccgggctgcaggccagcttgcgcccttatcagcagcaaggcttgaactggctgcaggccctgcgcgagatgggtaccggcggtatcctcggcgacgacATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATg                                                                                                                >  2:434157‑M1/114‑150 (MQ=255)                                 cAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATgtc                                                                                                              <  2:168411/150‑1 (MQ=255)                                             gAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGAt                                                                                                  >  1:368521/1‑150 (MQ=255)                                                      ggCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAgg                                                                                                                                  >  2:259658/1‑109 (MQ=255)                                                      ggCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAgg                                                                                                                                  <  1:259658/109‑1 (MQ=255)                                                       gCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTa                                                                                        <  2:368521/150‑1 (MQ=255)                                                        cTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTAc                                                                                       >  1:121269/1‑150 (MQ=255)                                                                 gcgcccttatcagcagcaaggcttgaactggctgcaggccctgcgcgagatgggtaccggcggtatcctcggcgacgacATgg                                                                                                                                                 <  1:305452‑M1/4‑1 (MQ=255)                                                                 gcgcccttatcagcagcaaggcttgaactggctgcaggccctgcgcgagatgggtaccggcggtatcctcggcgacgacATgg                                                                                                                                                 >  2:305452‑M1/80‑83 (MQ=255)                                                                      ttGGGAATGATGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAgg                                                                         >  2:135847/1‑150 (MQ=255)                                                                          tcagcagcaaggcttgaactggctgcaggccctgcgcgagatgggtaccggcggtatcctcggcgacgacATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGccc                                                                                                                   <  2:140429‑M1/34‑1 (MQ=255)                                                                          tcagcagcaaggcttgaactggctgcaggccctgcgcgagatgggtaccggcggtatcctcggcgacgacATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGccc                                                                                                                   >  1:140429‑M1/71‑104 (MQ=255)                                                                          gAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCt                                                                     <  2:121269/150‑1 (MQ=255)                                                                                         gCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGc                                                      <  1:270288/150‑1 (MQ=255)                                                                                          cATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGcc                                                     >  1:368441/1‑150 (MQ=255)                                                                                             gACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTtg                                                  <  1:135847/150‑1 (MQ=255)                                                                                                       ccgatctcACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCAACGGCATGCAGAGTCTTGCTCAGGCCCAGTTCTGCGCCTTTGTTACCGCCTTTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATaa                                        <  2:439406/143‑1 (MQ=255)                                                                                                            tGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGgcg                                   >  2:15001/1‑150 (MQ=255)                                                                                                               aCTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAgagatcgg                                >  1:439406/1‑143 (MQ=255)                                                                                                                                 tttCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCtt                                                                                                                             <  2:162531/39‑1 (MQ=255)                                                                                                                                 tttCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCtt                                                                                                                             >  1:162531/1‑39 (MQ=255)                                                                                                                                          cagcagATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTc     <  1:15001/150‑1 (MQ=255)                                                                                                                                             cagATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTAc  <  1:268736/150‑1 (MQ=255)                                                                                                                                             cagATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTAc  <  1:23677/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   CTGCGCCCCGGCCCATGCAGTGCCAGGACGCGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTAC  >  NC_002947/2448964‑2449253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.