| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2449107 = | 26 (1.380) | 3 (0.170) | 3/232 | NT | 13.2% | coding (2019/3318 nt) | PP_2146 | SNF2/RAD54 family helicase |
| ? | NC_002947 | 2449143 = | 15 (0.850) | coding (1983/3318 nt) | PP_2146 | SNF2/RAD54 family helicase | |||||
CGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTACCTGCAGGTCCCGG > NC_002947/2448994‑2449266 | aggtagaaccgcccaccgggctgcaggccagcttgcgcccttatcagcagcaaggcttgaactggctgcaggccctgcgcgagatgggtaccggcggtatcctcggcgacgacATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATg > 2:434157‑M1/114‑150 (MQ=255) cAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATgtc < 2:168411/150‑1 (MQ=255) gAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGAt > 1:368521/1‑150 (MQ=255) gCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTa < 2:368521/150‑1 (MQ=255) cTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTAc > 1:121269/1‑150 (MQ=255) ttGGGAATGATGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAgg > 2:135847/1‑150 (MQ=255) gAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCt < 2:121269/150‑1 (MQ=255) gCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGc < 1:270288/150‑1 (MQ=255) cATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGcc > 1:368441/1‑150 (MQ=255) gACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTtg < 1:135847/150‑1 (MQ=255) ccgatctcACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCAACGGCATGCAGAGTCTTGCTCAGGCCCAGTTCTGCGCCTTTGTTACCGCCTTTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATaa < 2:439406/143‑1 (MQ=255) tGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGgcg > 2:15001/1‑150 (MQ=255) aCTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAgagatcgg > 1:439406/1‑143 (MQ=255) cagcagATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTc < 1:15001/150‑1 (MQ=255) cagATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTAc < 1:268736/150‑1 (MQ=255) cagATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTAc < 1:23677/150‑1 (MQ=255) catgggcctgggcaagaccctgcaggccttggcccatGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTACCt > 2:434157‑M2/38‑150 (MQ=255) gggcctgggcaagaccctgcaggccttggcccatGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGa < 2:140429‑M2/70‑1 (MQ=255) gggcctgggcaagaccctgcaggccttggcccatGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGa > 1:140429‑M2/35‑104 (MQ=255) GGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTACCTGCa > 2:368441‑M1/1‑150 (MQ=255) gCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGAGAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTACCTGCAGGTCCCgg > 2:222722/1‑150 (MQ=255) ccatGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGgcgc < 1:305452‑M2/79‑1 (MQ=255) ccatGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGgcgc > 2:305452‑M2/5‑83 (MQ=255) | CGCAGGTCGGGGGCGAAGCGCTGGGCTTCGTCCAGCCAGTTGGGAATGAGGCTGGTCGGCATGACTGCCAGGGCCGGTGCACTCAGGCGCCCGGACTGTTTCTCCAGCAGCAGATGGGCCAAGGCCTGCAGGGTCTTGCCCAGGCCCATGTCGTCGCCGAGGATACCGCCGGTACCCATCTCGCGCAGGGCCTGCAGCCAGTTCAAGCCTTGCTGCTGATAAGGGCGCAAGCTGGCCTGCAGCCCGGTGGGCGGTTCTACCTGCAGGTCCCGG > NC_002947/2448994‑2449266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |