New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2615984	24 (1.280)	6 (0.340)	4/232	NT	21.2%	coding (108/1641 nt)	PP_2288	tail fiber protein
	?	NC_002947	= 2615995	22 (1.240)					coding (119/1641 nt)	PP_2288	tail fiber protein

CGGCTTCGGCTGGGGTTTTCTTTTTTTGGAACCCTCTATTTGGCTTACACACCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACTCCCAAGGATTCCGCCATTGTTTCTTTCCAGGATGGCTCCACGCTCCTGG  >  NC_002947/2615838‑2616132                                                                                                                                                   |                                                                                                                                                     cGGCTTCGGCTGGGGTTTTCTTTTTTTGGTCCCCTCTATTTGGCTTACACACCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGac                                                                                                                                                   >  1:13248/1‑150 (MQ=255) cGGCTTCGGCTGGGGTTTTCTTTTTTTGGAACCCTCTATTTGGCTTACACACCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGac                                                                                                                                                   >  2:371370/1‑150 (MQ=255)      tCGGCTGGGGTTTTCTTTTTTTAGCTACAGCTATTTGGCTTACACACCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAATCTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGt                                                                                                                                              <  1:128908/150‑1 (MQ=255)                         tttGGAACCCTCTATTTGGCTTACACACCCTACCAAAGTATTCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTCCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTgg                                                                                                                           <  1:155475/150‑1 (MQ=255)                         tttGGAACCCTCTATTTGGCTTACACACCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTgg                                                                                                                           <  1:371370/150‑1 (MQ=255)                          ttGGAACCCTCTATTTGGCTTACACACCCTACAGCTACGTCCAGTTGCGGGCGTACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTggg                                                                                                                          <  2:13248/150‑1 (MQ=255)                                 ccTCTATTTGGCTTACACACCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTc                                                                                                                   <  1:227385/150‑1 (MQ=255)                                       tttGGCTTACACACCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTaccc                                                                                                             <  2:136664/150‑3 (MQ=255)                                                 acacCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATc                                                                                                   <  2:85433/150‑1 (MQ=255)                                                 acacCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATc                                                                                                   >  2:334245/1‑150 (MQ=255)                                                      cTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACGATCAGGATCGCCTc                                                                                              >  2:189962/1‑150 (MQ=255)                                                         cAGCTACGTCCAGTTGAAAGCGGACGGAGCAACAACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCAAGCTGTCCGTGTACACAGTGGTCACGGACTTCACTTGGATAGATTCGTACACCATCAGGATCGCCTCcgc                                                                                           >  2:144965/1‑150 (MQ=255)                                                                           aGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGACCACTGTGTCcacggacacctggat                                                                                                                            >  1:110504‑M2/1‑84 (MQ=255)                                                                           aGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGACCACTGTGTCcacggacacctggat                                                                                                                            <  2:364147‑M2/99‑16 (MQ=255)                                                                           aGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGACCACTGTGTCcacggacacctggat                                                                                                                            <  2:110504‑M2/99‑16 (MQ=255)                                                                           aGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGACCACTGTGTCcacggacacctggat                                                                                                                            >  1:364147‑M2/1‑84 (MQ=255)                                                                               gacggaGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCg                                                                                                                  <  1:358470/105‑1 (MQ=255)                                                                               gacggaGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCg                                                                                                                  >  2:358470/1‑105 (MQ=255)                                                                                               aCTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCa                                                     >  1:240369/1‑150 (MQ=255)                                                                                                cTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCTGTGGACACAGTGGTCACGGACTTAACTTTTGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCAc                                                    <  1:189962/150‑1 (MQ=255)                                                                                                 ttCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACt                                                   >  1:481384/1‑150 (MQ=255)                                                                                                      cTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGACCACTGTGTCcacggacacctggatat                                                                                                                          >  1:506046‑M2/1‑57 (MQ=255)                                                                                                      cTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGACCACTGTGTCcacggacacctggatat                                                                                                                          <  2:506046‑M2/74‑18 (MQ=255)                                                                                                       ttCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTg                                                                                                                                             <  2:80939/54‑1 (MQ=255)                                                                                                       ttCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTg                                                                                                                                             >  1:80939/1‑54 (MQ=255)                                                                                                          aaCTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACtt                                                                                                                             >  1:169052/1‑67 (MQ=255)                                                                                                          aaCTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACtt                                                                                                                             <  2:169052/67‑1 (MQ=255)                                                                                                                 ccTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACTCCCAAGGATTCCGCCa                                   <  2:240369/150‑1 (MQ=255)                                                                                                                        ggACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACTCCCAAGGATTCCGCCATTGtttc                            <  1:58602/150‑1 (MQ=255)                                                                                                                                   atatCCAGGTGTCCGTGgacacagtggtcacggacacctggatatgggcggtgtccaggtaggggaagttgaag                                                                                             >  1:506046‑M1/1‑17 (MQ=255)                                                                                                                                   atatCCAGGTGTCCGTGgacacagtggtcacggacacctggatatgggcggtgtccaggtaggggaagttgaag                                                                                             <  2:506046‑M1/74‑58 (MQ=255)                                                                                                                                     atCCAGGTGTCCGTGgacacagtggtcacggacacctggatatgggcggtgtccaggtaggggaagttgaaggggaagtttgtggttgctccgtccgct                                                                  <  2:364147‑M1/99‑85 (MQ=255)                                                                                                                                     atCCAGGTGTCCGTGgacacagtggtcacggacacctggatatgggcggtgtccaggtaggggaagttgaaggggaagtttgtggttgctccgtccgct                                                                  >  1:364147‑M1/1‑15 (MQ=255)                                                                                                                                     atCCAGGTGTCCGTGgacacagtggtcacggacacctggatatgggcggtgtccaggtaggggaagttgaaggggaagtttgtggttgctccgtccgct                                                                  <  2:110504‑M1/99‑85 (MQ=255)                                                                                                                                     atCCAGGTGTCCGTGgacacagtggtcacggacacctggatatgggcggtgtccaggtaggggaagttgaaggggaagtttgtggttgctccgtccgct                                                                  >  1:110504‑M1/1‑15 (MQ=255)                                                                                                                                        cAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACTCCCAAGGATTCCGCCATTGTTTCTTTCCAGGATGGCTcc            >  1:13864/1‑150 (MQ=255)                                                                                                                                          ggTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACTCCCAAGGATTCCGCCATTGTTTCTTTCCAGGATGGCTCCAc          <  2:481384/150‑1 (MQ=255)                                                                                                                                           aagtCCGTGACCACTGTGTCCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACTCCCAAGGATTCCGCCATTGTTTCTTTCCCGGATGGCTCCACg         >  1:78125/3‑150 (MQ=255)                                                                                                                                                  tGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACTCCCAAGGATTCCGCCATTGTTTTTTTCTAGGTTGTTGACACGCTCCTgg  >  1:358452/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CGGCTTCGGCTGGGGTTTTCTTTTTTTGGAACCCTCTATTTGGCTTACACACCCTACAGCTACGTCCAGTTGAAAGCGGACGGAGCAACCACAAACTTCCCCTTCAACTTCCCCTACCTGGACACCGCCCATATCCAGGTGTCCGTGGACACAGTGGTCACGGACTTCACTTGGGTAGATTCGTACACCATCAGGATCGCCTCCGCGCCTGTCGCTGGTGGCGTGGTCGAGATTCGCCGGATCACTCCCAAGGATTCCGCCATTGTTTCTTTCCAGGATGGCTCCACGCTCCTGG  >  NC_002947/2615838‑2616132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.