New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2622525	6 (0.320)	3 (0.170)	3/234	NT	27.6%	intergenic (+273/‑75)	PP_5515/PP_5516	hypothetical protein/hypothetical protein
	?	NC_002947	= 2622573	10 (0.560)					intergenic (+321/‑27)	PP_5515/PP_5516	hypothetical protein/hypothetical protein

GGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTGGGCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGAGGGCTACACACAGCTCCAATCGTGATGGCAAAATGCTGCCCACGTATCGCTAGCGGCAGAGAGCCGGAGACAGGGGAAGTTATGGCAGTTAATTCG  >  NC_002947/2622415‑2622671                                                                                                               |                                                                                                                                                   ggAAAACCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTGGGCCCTCtgcgcaaaaacagatagccgaacgtccacacgcttagga                                                                                                             >  2:274298‑M1/1‑111 (MQ=255)                cacGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTGGGCCCTCtgcgcaaaaacagatagccgaacgtccacacgcttaggatttgccgctgagggc                                                                                              <  2:210585‑M1/150‑55 (MQ=255)                  cGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTGGGCCCTCtgcgcaaaaacagatagccgaacgtccacacgcttaggatttgccgctgagggccc                                                                                            <  1:274298‑M1/150‑57 (MQ=255)                                                                        cggcCATCTTCGGCCCTTTGTGGGGCTTTTTTGGGCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGAGGGCTACACACAGCTCCAATCGTGATGGCAAAATGCTGCCCACGTATCGCTAGCGGCaga                                      <  1:419376/150‑1 (MQ=255)                                                                                       cTTTGTGGGGCTTTTTTGGGCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGAGGGCTACACACAGCTCCAATCGTGa                                                                         <  1:236205/100‑1 (MQ=255)                                                                                       cTTTGTGGGGCTTTTTTGGGCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGAGGGCTACACACAGCTCCAATCGTGa                                                                         >  2:236205/1‑100 (MQ=255)                                                                                       cTTTGTGGGGCTTTTTTGGGCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGAGGGCTACACACAGCTCCAATCGTGATGGCAAAATGCTGCCCACGTATCGCTAGCGGCAGAGAGCCgg                               >  1:235524/1‑142 (MQ=255)                                                                                       cTTTGTGGGGCTTTTTTGGGCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGAGGGCTACACACAGCTCCAATCGTGATGGCAAAATGCTGCCCACGTATCGCTAGCGGCAGAGAGCCgg                               <  2:235524/142‑1 (MQ=255)                                                                                                    ttttGGGCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGAGGGCTACACACAGCTCCAATCGTGATGGCAAAATGCTGCCCACGTATCGCTAGCGGCAGAGAGCCGGAGACAGGGGAAGTTATGGCAg          <  2:227483/150‑1 (MQ=255)                                                                                                        gggCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAgagggcccaaaaaagccccacaaagggccgaagatggccgcctgtgaggctggaaaggtggagcgcgggattcttaatctggtgacaggtcccg      <  1:274298‑M2/150‑95 (MQ=255)                                                                                                          gCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAgagggcccaaaaaagccccacaaagggccgaagatggccgcctgtgaggctggaaaggtggagcgcgggattcttaatctggtgacaggtcccgtg    <  2:210585‑M2/150‑97 (MQ=255)                                                                                                            ccTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGCGGGAACCGCACAGCTCCAAACTGGGTGGCAAAATGCTGCCCACGTATCGCTAGCGGCAGAGAGCCGGAGACAGGGGAAGTTATGGCAGTTAAttcg  >  1:316927/1‑150 (MQ=255)                                                                                                               |                                                                                                                                                   GGAAACCCCAGTAAACACGGGACCTGTCACCAGATTAAGAATCCCGCGCTCCACCTTTCCAGCCTCACAGGCGGCCATCTTCGGCCCTTTGTGGGGCTTTTTTGGGCCCTCAGCGGCAAATCCTAAGCGTGTGGACGTTCGGCTATCTGTTTTTGCGCAGAGGGCTACACACAGCTCCAATCGTGATGGCAAAATGCTGCCCACGTATCGCTAGCGGCAGAGAGCCGGAGACAGGGGAAGTTATGGCAGTTAATTCG  >  NC_002947/2622415‑2622671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.